Achromobacter xylosoxidans JCM 9787 is a bacterium that was isolated from Soil from the Arakawa River,by enrichment with biphenyl as the sole source of carbon and energy.
genome sequence 16S sequence Bacteria| @ref 20215 |
|
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Betaproteobacteria |
| Order Burkholderiales |
| Family Alcaligenaceae |
| Genus Achromobacter |
| Species Achromobacter xylosoxidans |
| Full scientific name Achromobacter xylosoxidans (ex Yabuuchi and Ohyama 1971) Yabuuchi and Yano 1981 |
| Synonyms (4) |
| @ref | Gram stain | Confidence | |
|---|---|---|---|
| 125438 | negative | 94.664 |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 67770 | positive | growth | 30 |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | obligate aerobe | 98.8 |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|---|
| 67770 | Soil from the Arakawa River,by enrichment with biphenyl as the sole source of carbon and energy | Saitama Pref. | Japan | JPN | Asia |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | |
|---|---|---|---|---|---|---|---|
| 66792 | ASM131212v1 assembly for Achromobacter xylosoxidans JCM 9787 | contig | 1295130 | ||||
| 66792 | ASM1463470v1 assembly for Achromobacter denitrificans A41 | contig | 32002 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 67770 | Alcaligenes xylosoxydans DNA for 16S rRNA, partial sequence | D87096 | 882 | 85698 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 76.80 | no |
| 125439 | motility | BacteriaNetⓘ | no | 65.00 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 88.80 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 98.80 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 94.66 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 93.04 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 85.92 | no |
| 125438 | aerobic | aerobicⓘ | yes | 82.62 | no |
| 125438 | thermophilic | thermophileⓘ | no | 95.24 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 69.22 | no |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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https://doi.org/10.13145/bacdive166058.20251217.10
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BacDive in 2025: the core database for prokaryotic strain data