Strain identifier
BacDive ID: 166058
Type strain: 
Species: Achromobacter xylosoxidans
Strain history: T. Kudo A41.
NCBI tax ID(s): 1295130 (strain), 85698 (species)
version 9.2 (current version)
General
@ref: 67770
BacDive-ID: 166058
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Achromobacter xylosoxidans JCM 9787 is a mesophilic, Gram-negative bacterium that was isolated from Soil from the Arakawa River,by enrichment with biphenyl as the sole source of carbon and energy.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1295130 | strain |
| 85698 | species |
strain history
- @ref: 67770
- history: T. Kudo A41.
doi: 10.13145/bacdive166058.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Achromobacter
- species: Achromobacter xylosoxidans
- full scientific name: Achromobacter xylosoxidans (ex Yabuuchi and Ohyama 1971) Yabuuchi and Yano 1981
synonyms
@ref synonym 20215 Alcaligenes xylosoxydans 20215 Alcaligenes xylosoxidans 20215 Alcaligenes denitrificans subsp. xylosoxydans 20215 Achromobacter xylosoxidans
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Achromobacter
species: Achromobacter xylosoxidans
full scientific name: Achromobacter xylosoxidans Yabuuchi and Yano 1981
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 94.664
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil from the Arakawa River,by enrichment with biphenyl as the sole source of carbon and energy
- geographic location: Saitama Pref.
- country: Japan
- origin.country: JPN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Alcaligenes xylosoxydans DNA for 16S rRNA, partial sequence
- accession: D87096
- length: 882
- database: nuccore
- NCBI tax ID: 85698
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Achromobacter xylosoxidans JCM 9787 | GCA_001312125 | contig | ncbi | 1295130 |
| 66792 | Achromobacter denitrificans strain A41 | 32002.45 | wgs | patric | 32002 |
| 66792 | Achromobacter xylosoxidans JCM 9787 | 1295130.3 | wgs | patric | 1295130 |
| 66792 | Achromobacter xylosoxidans JCM 9787 | 2728369710 | draft | img | 1295130 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 79 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 94.664 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 93.036 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 85.915 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 82.624 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95.238 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 69.224 | no |
External links
@ref: 67770
culture collection no.: JCM 9787
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |