Planomonospora parontospora subsp. antibiotica (DSM 43869, ATCC 23864, CBS 116.69)

Name: Planomonospora parontospora subsp. antibiotica (DSM 43869, ATCC 23864, CBS 116.69)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16578

Type strain

Strain Designation B-987

Culture col. no. DSM 43869 ATCC 23864 CBS 116.69 JCM 3094 B-987 4 more

NCBI tax ID(s) 97193

Special Collections DSMZ JCM

History <- ATCC <- J.E. Thiemann, B-987 KCC A-0094 <-- J. E. Thiemann B/987.

Links

Planomonospora parontospora subsp. antibiotica B-987 is a mesophilic prokaryote that produces antibiotic compounds and was isolated from soil.

antibiotic compound production mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 38273

ATCC 23864,DSM 43869,JCM 3094,IFO 15869,CBS 116.69,NBRC 15869

@ref 20215

Last LPSN update 2026-02-09 11:22:00

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Streptosporangiaceae

Genus Planomonospora

Species Planomonospora parontospora subsp. antibiotica

Full scientific name Planomonospora parontospora subsp. antibiotica Thiemann et al. 1968 (Approved Lists 1980)

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	98.5

Multimedia

@ref:	11350
multimedia content:	DSM_43869.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_43869.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
11350	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
11350	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
11350	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.6

Compound production

11350

Compoundsporangiomycine

Metabolite production

@ref	Metabolite	Production
67770	sporangiomycin

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
11350	soil
67770	Soil	Buenos Aires	Argentina	ARG	Middle and South America

Taxonmaps

69479

Global distribution of 16S sequence AB028653 (>99% sequence identity) for Planomonospora from Microbeatlas

Aquatic Samples	8
Soil Samples	326
Animal Samples	29
Plant Samples	23
Total Samples	386

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11350	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464795v1 assembly for Planomonospora parontospora subsp. antibiotica JCM 3094	contig	GCA_014647955	97193.3	8064116346	97193	34.83
66792	ASM1686323v1 assembly for Planomonospora parontospora subsp. antibiotica NBRC 15869	contig	GCA_016863235	97193.4	8099048444	97193	18.66

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Planomonospora parontospora subsp. antibiotica gene for 16S ribosomal RNA	AB028653	1446		97193
124043	Planomonospora parontospora subsp. antibiotica strain JCM 3094 16S ribosomal RNA gene, partial sequence.	MT760404	1340		97193

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Planomonospora parontospora subsp. antibiotica JCM 3094
NCBI: GCA_014647955

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	69.20	no
125439	motility	BacteriaNetⓘ	no	78.20	no
125439	gram_stain	BacteriaNetⓘ	positive	98.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Planomonospora parontospora subsp. antibiotica strain JCM 3094
PATRIC: 97193.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	84.58	no
125438	anaerobic	anaerobicⓘ	no	91.21	no
125438	aerobic	aerobicⓘ	yes	85.45	no
125438	spore-forming	spore-formingⓘ	yes	88.02	no
125438	thermophilic	thermophileⓘ	no	92.41	yes
125438	flagellated	motile2+ⓘ	no	57.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients.	Heuer H, Krsek M, Baker P, Smalla K, Wellington EM.	Appl Environ Microbiol	10.1128/aem.63.8.3233-3241.1997	1997
Pathogenicity	Resistance to thiostrepton, siomycin, and sporangiomycin in actinomycetes that produce them.	Thompson J, Cundliffe E.	J Bacteriol	10.1128/jb.142.2.455-461.1980	1980
Phylogeny	Distribution and phylogenetic analysis of family 19 chitinases in Actinobacteria.	Kawase T, Saito A, Sato T, Kanai R, Fujii T, Nikaidou N, Miyashita K, Watanabe T.	Appl Environ Microbiol	10.1128/aem.70.2.1135-1144.2004	2004
Phylogeny	Planomonospora algeriensis sp. nov., an actinobacterium isolated from a Saharan soil of Algeria.	Chaabane Chaouch F, Bouras N, Mokrane S, Bouznada K, Zitouni A, Potter G, Sproer C, Klenk HP, Sabaou N.	Antonie Van Leeuwenhoek	10.1007/s10482-016-0795-1	2017

References

#11350	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43869
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Planomonospora parontospora subsp. antibiotica (DSM 43869, ATCC 23864, CBS 116.69)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Compound production

Metabolite production

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014647955

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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