Name: Planomonospora parontospora subsp. antibiotica B-987
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16578

Type strain:

Species: Planomonospora parontospora subsp. antibiotica

Strain Designation: B-987

Culture col. no.: DSM 43869, ATCC 23864, CBS 116.69, JCM 3094, IFM 1247, IFO 15869, IMSNU 22076, NBRC 15869

Strain history: KCC A-0094 <-- J. E. Thiemann B/987.

NCBI tax ID(s): 97193 (subspecies)

SI-ID 38273

ATCC 23864, DSM 43869, JCM 3094, IFO 15869, CBS 116.69, NBRC 15869

Special Collections

DSMZ
JCM

Section

Planomonospora parontospora subsp. antibiotica B-987 is a spore-forming, Gram-positive bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
Gram-positive
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Planomonospora*
	Species	**Planomonospora parontospora subsp. antibiotica**
	Full Scientific Name (LPSN)	Planomonospora parontospora subsp. antibiotica Thiemann et al. 1968 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #11350]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

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Name of produced compound

sporangiomycine

	Metabolite production	Metabolite	Production
[Ref.: #67770]		sporangiomycin	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11350]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Buenos Aires
[Ref.: #67770]	Country	Argentina
[Ref.: #67770]	Country ISO 3 Code	ARG
[Ref.: #67770]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB028653 (>99% sequence identity) for Planomonospora from Microbeatlas

Aquatic Samples	8
Soil Samples	326
Animal Samples	29
Plant Samples	23
Total Samples	386

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Planomonospora parontospora subsp. antibiotica gene for 16S ribosomal RNA	AB028653	1446	GenBank ENA	97193 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Planomonospora parontospora subsp. antibiotica JCM 3094	GCA_014647955	contig	GenBank ENA	97193 tax ID	*
[Ref.: #66792]	Planomonospora parontospora subsp. antibiotica NBRC 15869	GCA_016863235	contig	GenBank ENA	97193 tax ID	*
[Ref.: #66792]	Planomonospora parontospora subsp. antibiotica strain JCM 3094	97193.3	wgs	PATRIC	97193 tax ID	*
[Ref.: #66792]	Planomonospora parontospora subsp. antibiotica strain NBRC 15869	97193.4	wgs	PATRIC	97193 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Planomonospora parontospora subsp. antibiotica strain NBRC 15869 PATRIC: 97193.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Planomonospora parontospora subsp. antibiotica strain JCM 3094 PATRIC: 97193.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	84.581	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	91.211	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.451	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	88.021	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.409	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	57	no

Availability in culture collections External links

[Ref.: #11350]

Culture collection no.

DSM 43869, ATCC 23864, CBS 116.69, JCM 3094, IFM 1247, IFO 15869, IMSNU 22076, NBRC 15869

[Ref.: #85605]

SI-ID 38273

References

#11350

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43869

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85605

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38273.1 )

* These data were automatically processed and therefore are not curated

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Planomonospora parontospora subsp. antibiotica strain NBRC 15869

Planomonospora parontospora subsp. antibiotica strain JCM 3094

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