Strain identifier
BacDive ID: 16578
Type strain: 
Species: Planomonospora parontospora subsp. antibiotica
Strain Designation: B-987
Strain history: KCC A-0094 <-- J. E. Thiemann B/987.
NCBI tax ID(s): 97193 (subspecies)
version 9.1 (current version)
General
@ref: 11350
BacDive-ID: 16578
DSM-Number: 43869
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, Gram-positive, antibiotic compound production
description: Planomonospora parontospora subsp. antibiotica B-987 is a spore-forming, Gram-positive bacterium that produces antibiotic compounds and was isolated from soil.
NCBI tax id
- NCBI tax id: 97193
- Matching level: subspecies
strain history
| @ref | history |
|---|---|
| 11350 | <- ATCC <- J.E. Thiemann, B-987 |
| 67770 | KCC A-0094 <-- J. E. Thiemann B/987. |
doi: 10.13145/bacdive16578.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Streptosporangiaceae
- genus: Planomonospora
- species: Planomonospora parontospora subsp. antibiotica
- full scientific name: Planomonospora parontospora subsp. antibiotica Thiemann et al. 1968 (Approved Lists 1980)
@ref: 11350
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptosporangiaceae
genus: Planomonospora
species: Planomonospora parontospora subsp. antibiotica
full scientific name: Planomonospora parontospora subsp. antibiotica Thiemann et al. 1968
strain designation: B-987
type strain: yes
Morphology
multimedia
- @ref: 11350
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_43869.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 11350 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 11350 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 11350 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: yes
- confidence: 100
compound production
- @ref: 11350
- compound: sporangiomycine
metabolite production
- @ref: 67770
- metabolite: sporangiomycin
- production: yes
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 11350 | soil | ||||
| 67770 | Soil | Buenos Aires | Argentina | ARG | Middle and South America |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_3641.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_1144;97_2268;98_2784;99_3641&stattab=map
- Last taxonomy: Planomonospora
- 16S sequence: AB028653
- Sequence Identity:
- Total samples: 386
- soil counts: 326
- aquatic counts: 8
- animal counts: 29
- plant counts: 23
Safety information
risk assessment
- @ref: 11350
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Planomonospora parontospora subsp. antibiotica gene for 16S ribosomal RNA
- accession: AB028653
- length: 1446
- database: nuccore
- NCBI tax ID: 97193
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Planomonospora parontospora subsp. antibiotica JCM 3094 | GCA_014647955 | contig | ncbi | 97193 |
| 66792 | Planomonospora parontospora subsp. antibiotica NBRC 15869 | GCA_016863235 | contig | ncbi | 97193 |
| 66792 | Planomonospora parontospora subsp. antibiotica strain JCM 3094 | 97193.3 | wgs | patric | 97193 |
| 66792 | Planomonospora parontospora subsp. antibiotica strain NBRC 15869 | 97193.4 | wgs | patric | 97193 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 84.581 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 91.211 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 85.451 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 88.021 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 92.409 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 57 | no |
External links
@ref: 11350
culture collection no.: DSM 43869, ATCC 23864, CBS 116.69, JCM 3094, IFM 1247, IFO 15869, IMSNU 22076, NBRC 15869
straininfo link
- @ref: 85605
- straininfo: 38273
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 11350 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43869) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43869 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 85605 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID38273.1 | StrainInfo: A central database for resolving microbial strain identifiers |