Name: Microtetraspora niveoalba Mt-3
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16532

Type strain:

Species: Microtetraspora niveoalba

Strain Designation: Mt-3

Culture col. no.: DSM 43174, ATCC 27301, IFO 15239, JCM 3149, KCC A-0149, NBRC 15239, BCRC 12583, CBS 264.72, IMSNU 20093, KCTC 9276

Strain history: KCC A-0149 <-- H. Nonomura Mt-3.

NCBI tax ID(s): 46175 (species)

SI-ID 93032

ATCC 27301, DSM 43174, IFO 15239, JCM 3149, CCRC 12583, CBS 264.72, KCTC 9276, NBRC 15239, BCRC 12583

Special Collections

Section

Microtetraspora niveoalba Mt-3 is a spore-forming bacterium that builds an aerial mycelium and was isolated from soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Microtetraspora*
	Species	**Microtetraspora niveoalba**
	Full Scientific Name (LPSN)	Microtetraspora niveoalba Nonomura and Ohara 1971 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #19554]	Colony color	Green
[Ref.: #19554]	Incubation period	10-14 days
[Ref.: #19554]	Cultivation medium used	ISP 2

[Ref.: #19554]	Colony color	Beige
[Ref.: #19554]	Incubation period	10-14 days
[Ref.: #19554]	Cultivation medium used	ISP 3

[Ref.: #19554]	Colony color	Beige
[Ref.: #19554]	Incubation period	10-14 days
[Ref.: #19554]	Cultivation medium used	ISP 4

[Ref.: #19554]	Colony color	Green
[Ref.: #19554]	Incubation period	10-14 days
[Ref.: #19554]	Cultivation medium used	ISP 5

[Ref.: #19554]	Colony color	Beige
[Ref.: #19554]	Incubation period	10-14 days
[Ref.: #19554]	Cultivation medium used	ISP 6

[Ref.: #19554]	Colony color	Green
[Ref.: #19554]	Incubation period	10-14 days
[Ref.: #19554]	Cultivation medium used	ISP 7

[Ref.: #19554]	Multicellular complex forming ability	yes
[Ref.: #19554]	Multicellular complex name	Aerial Mycelium
[Ref.: #19554]	Multicellular complex color	White
[Ref.: #19554]	Medium Name (multicellularity)	ISP 2

[Ref.: #19554]	Multicellular complex forming ability	yes
[Ref.: #19554]	Multicellular complex name	Aerial Mycelium
[Ref.: #19554]	Multicellular complex color	White
[Ref.: #19554]	Medium Name (multicellularity)	ISP 3

[Ref.: #19554]	Multicellular complex forming ability	yes
[Ref.: #19554]	Multicellular complex name	Aerial Mycelium
[Ref.: #19554]	Multicellular complex color	White
[Ref.: #19554]	Medium Name (multicellularity)	ISP 4

[Ref.: #19554]	Multicellular complex forming ability	yes
[Ref.: #19554]	Multicellular complex name	Aerial Mycelium
[Ref.: #19554]	Multicellular complex color	White
[Ref.: #19554]	Medium Name (multicellularity)	ISP 5

[Ref.: #19554]	Multicellular complex forming ability	no
[Ref.: #19554]	Medium Name (multicellularity)	ISP 6

[Ref.: #19554]	Multicellular complex forming ability	yes
[Ref.: #19554]	Multicellular complex name	Aerial Mycelium
[Ref.: #19554]	Multicellular complex color	White
[Ref.: #19554]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10842]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #10842]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 4

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Culture medium growth

[Ref.: #19554]

Culture medium composition

expand / minimize

[Ref.: #19554]

Culture medium

ISP 5

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Culture medium growth

[Ref.: #19554]

Culture medium composition

expand / minimize

[Ref.: #19554]

Culture medium

ISP 6

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Culture medium growth

[Ref.: #19554]

Culture medium composition

expand / minimize

[Ref.: #19554]

Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

expand / minimize

[Ref.: #10842]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #10842]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #10842]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #10842]	growth	37 °C
[Ref.: #19554]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19554]	Spore description	Formation of spore chains: short, spore surface: smooth
[Ref.: #19554]	Type of spore	spore
[Ref.: #19554]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %98

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19554]		NaCl		maximum	2.5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₆), MK-9(H₄), MK-9(H₂), MK-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19554]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19554]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #19554]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19554]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19554]	mannitol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19554]	raffinose ChEBI	+/-
[Ref.: #19554]	rhamnose ChEBI	+/-
[Ref.: #19554]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19554]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E, API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19554]	407	+	-	-	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19554]	396	not determinedn.d.	+	-	+	-	-	-	-	-	-	+	-	-	+	-	+	-	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10842]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yamanashi Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19554]	Biosafety level	1	Risk group (German classification)
[Ref.: #10842]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Microtetraspora niveoalba 16S rRNA gene	U48976	1416	GenBank ENA	46175 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Microtetraspora niveoalba NBRC 15239	GCA_001570405	scaffold	GenBank ENA	46175 tax ID
[Ref.: #66792]	Microtetraspora niveoalba strain NBRC 15239	46175.3	wgs	PATRIC	46175 tax ID	*
[Ref.: #66792]	Microtetraspora niveoalba NBRC 15239	2724679248	draft	JGI IMG/M	46175 tax ID	*

[Ref.: #67770]

GC-content

71.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microtetraspora niveoalba NBRC 15239 NCBI: GCA_001570405.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	98	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microtetraspora niveoalba strain NBRC 15239 PATRIC: 46175.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	85.016	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	92.849	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	89.815	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.101	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.412	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88	no

Availability in culture collections External links

[Ref.: #10842]

Culture collection no.

DSM 43174, ATCC 27301, IFO 15239, JCM 3149, KCC A-0149, NBRC 15239, BCRC 12583, CBS 264.72, IMSNU 20093, KCTC 9276

[Ref.: #85563]

SI-ID 93032

References

#10842

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43174

#19554

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85563

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID93032.1 )

* These data were automatically processed and therefore are not curated

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Microtetraspora niveoalba NBRC 15239

Microtetraspora niveoalba strain NBRC 15239

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