Name: Streptomyces brevispora BK160
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16491

Type strain:

Species: Streptomyces brevispora

Strain Designation: BK160

Culture col. no.: DSM 42059, KACC 21093, NCIMB 14702

Strain history: <- S. W. Kwon, KACC; KACC 21093

NCBI tax ID(s): 887462 (species)

SI-ID 406774

DSM 42059

Special Collections

Section

Streptomyces brevispora BK160 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from hay meadow soil sample.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces brevispora**
	Full Scientific Name (LPSN)	Streptomyces brevispora Zucchi et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30151]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %92.077

[Ref.: #30151]	Cell length	0.7-0.9 µm

[Ref.: #30151]	Cell width	0.7-0.8 µm

Multimedia content

[Ref.: #18061]

Caption:

Medium 65 28°C

[Ref.: #18061]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18061]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #18061]

Culture medium growth

[Ref.: #18061]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18061]

Culture medium composition

expand / minimize

[Ref.: #18061]

Culture medium

OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248)

[Ref.: #18061]

Culture medium growth

[Ref.: #18061]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18061]

Culture medium composition

expand / minimize

[Ref.: #18061]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #18061]

Culture medium growth

[Ref.: #18061]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18061]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18061]			growth	28 °C
[Ref.: #30151]			growth	04-37 °C

	pH	Kind of pH		pH
[Ref.: #30151]			growth	05-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30151]	Oxygen tolerance	aerobe
[Ref.: #69480]	Oxygen tolerance	aerobe Confidence in %90.796

[Ref.: #30151]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #30151]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30151]	cellobiose ChEBI	+	carbon source
[Ref.: #30151]	galactose ChEBI	+	carbon source
[Ref.: #30151]	glucose ChEBI	+	carbon source
[Ref.: #30151]	L-arabitol ChEBI	+	carbon source
[Ref.: #30151]	maltose ChEBI	+	carbon source
[Ref.: #30151]	melibiose ChEBI	+	carbon source
[Ref.: #30151]	salicin ChEBI	+	carbon source
[Ref.: #30151]	sorbitol ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18061]	Sample type/isolated from	hay meadow soil sample
[Ref.: #18061]	Geographic location (country and/or sea, region)	Northumberland, Cockle Park Experimental Farm
[Ref.: #18061]	Country	United Kingdom
[Ref.: #18061]	Country ISO 3 Code	GBR
[Ref.: #18061]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Meadow
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18061]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18061]	Streptomyces brevispora partial 16S rRNA gene, type strain BK160T	FR692104	1457	GenBank ENA	887462 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces brevispora DSM 42059	GCA_007829885	contig	GenBank ENA	887462 tax ID	*
[Ref.: #66792]	Streptomyces brevispora strain DSM 42059	887462.3	wgs	PATRIC	887462 tax ID	*
[Ref.: #66792]	Streptomyces brevispora DSM 42059	2818991477	draft	JGI IMG/M	887462 tax ID	*

[Ref.: #18061]

GC-content

69.2 mol%

fluorimetric

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces brevispora strain DSM 42059 PATRIC: 887462.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces brevispora strain DSM 42059 PATRIC: 887462.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.077	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.347	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	90.796	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	88.82	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89.5	no

Availability in culture collections External links

[Ref.: #18061]

Culture collection no.

DSM 42059, KACC 21093, NCIMB 14702

[Ref.: #85524]

SI-ID 406774

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces caldifontis sp. nov., isolated from a hot water spring of Tatta Pani, Kotli, Pakistan.	Amin A, Ahmed I, Khalid N, Osman G, Khan IU, Xiao M, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-016-0778-2	2016	*
Phylogeny	Streptomyces brevispora sp. nov. and Streptomyces laculatispora sp. nov., actinomycetes isolated from soil.	Zucchi TD, Kim BY, Kshetrimayum JD, Weon HY, Kwon SW, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijs.0.029991-0	2011	*

References

#18061

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42059

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30151

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26502 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85524

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406774.1 )

#26502

IJSEM 478 2012 ( DOI 10.1099/ijs.0.029991-0 , PubMed 21478394 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces brevispora in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Streptomyces brevispora strain DSM 42059

Streptomyces brevispora strain DSM 42059

Change proposal

Change proposal