Name: Streptomyces brevispora BK160
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16491

Type strain:

Species: Streptomyces brevispora

Strain Designation: BK160

Culture col. no.: DSM 42059, KACC 21093, NCIMB 14702

Strain history: <- S. W. Kwon, KACC; KACC 21093

NCBI tax ID(s): 887462 (species)

SI-ID 406774

DSM 42059

Section

Streptomyces brevispora BK160 is an aerobe, spore-forming, mesophilic bacterium that was isolated from hay meadow soil sample.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces brevispora**
	Full Scientific Name (LPSN)	Streptomyces brevispora Zucchi et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30151]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30151]	Cell length	0.7-0.9 µm

[Ref.: #30151]	Cell width	0.7-0.8 µm

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18061]			growth	28 °C
[Ref.: #30151]			growth	04-37 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30151]			growth	05-09

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

[Ref.: #30151]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

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Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30151]	cellobiose ChEBI	+	carbon source
[Ref.: #30151]	galactose ChEBI	+	carbon source
[Ref.: #30151]	glucose ChEBI	+	carbon source
[Ref.: #30151]	L-arabitol ChEBI	+	carbon source
[Ref.: #30151]	maltose ChEBI	+	carbon source
[Ref.: #30151]	melibiose ChEBI	+	carbon source
[Ref.: #30151]	salicin ChEBI	+	carbon source
[Ref.: #30151]	sorbitol ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18061]	Sample type/isolated from	hay meadow soil sample
[Ref.: #18061]	Geographic location (country and/or sea, region)	Northumberland, Cockle Park Experimental Farm
[Ref.: #18061]	Country	United Kingdom
[Ref.: #18061]	Country ISO 3 Code	GBR
[Ref.: #18061]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Meadow
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18061]	Streptomyces brevispora partial 16S rRNA gene, type strain BK160T	FR692104	1457	ENA	887462 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces brevispora DSM 42059	GCA_007829885	contig	GenBank	887462 tax ID	*
[Ref.: #66792]	Streptomyces brevispora strain DSM 42059	887462.3	wgs	PATRIC	887462 tax ID	*
[Ref.: #66792]	Streptomyces brevispora DSM 42059	2818991477	draft	JGI IMG/M	887462 tax ID	*

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GC-content

69.2 mol%

fluorimetric

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces brevispora strain DSM 42059 PATRIC: 887462.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces brevispora strain DSM 42059 PATRIC: 887462.3
[Ref.: #69480]	motile	no	94.83	no
[Ref.: #69480]	flagellated	no	97.555	no
[Ref.: #69480]	gram-positive	yes	88.849	yes
[Ref.: #69480]	anaerobic	no	98.841	yes
[Ref.: #69480]	halophile	no	92.645	no
[Ref.: #69480]	spore-forming	yes	93.831	no
[Ref.: #69480]	thermophile	no	98.381	no
[Ref.: #69480]	glucose-util	yes	89.198	no
[Ref.: #69480]	aerobic	yes	92.251	yes
[Ref.: #69480]	glucose-ferment	no	89.388	no

Availability in culture collections External links

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Culture collection no.

DSM 42059, KACC 21093, NCIMB 14702

[Ref.: #85524]

SI-ID 406774

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces caldifontis sp. nov., isolated from a hot water spring of Tatta Pani, Kotli, Pakistan.	Amin A, Ahmed I, Khalid N, Osman G, Khan IU, Xiao M, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-016-0778-2	2016	*
Phylogeny	Streptomyces brevispora sp. nov. and Streptomyces laculatispora sp. nov., actinomycetes isolated from soil.	Zucchi TD, Kim BY, Kshetrimayum JD, Weon HY, Kwon SW, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijs.0.029991-0	2011	*

References

#18061

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42059

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30151

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26502 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85524

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406774.1 )

#26502

IJSEM 478 2012 ( DOI 10.1099/ijs.0.029991-0 , PubMed 21478394 )

* These data were automatically processed and therefore are not curated

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Streptomyces brevispora strain DSM 42059

Streptomyces brevispora strain DSM 42059

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