Streptomyces qinglanensis (DSM 42035, CGMCC 4.6825, 172205)

Name: Streptomyces qinglanensis (DSM 42035, CGMCC 4.6825, 172205)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16492

Type strain

Strain Designation 172205

Culture col. no. DSM 42035 CGMCC 4.6825 172205 JCM 19680

NCBI tax ID(s) 943816

Special Collections DSMZ JCM Literature strains

History <- K. Hong, Haikou City, China; 172205 <- X. Xie CGMCC 4.6825 <-- H. Hu et al. 172205.

Links

Streptomyces qinglanensis 172205 is a spore-forming, mesophilic, ovoid-shaped prokaryote that was isolated from mangrove soil.

spore-forming ovoid-shaped mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 401532

DSM 42035

@ref 20215

Last LPSN update 2026-02-09 11:21:59

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces qinglanensis

Full scientific name Streptomyces qinglanensis Hu et al. 2012

Morphology

Cell morphology

@ref	Cell length	Cell width	Cell shape	Gram stain	Confidence
30273	0.5-1.0 µm	0.3-0.7 µm	ovoid-shaped
125439				positive	99.6

Pigmentation

30273

Productionno

Multimedia

@ref:	17693
multimedia content:	DSM_42035.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_42035.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
17693	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
17693	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
17693	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
17693	positive	growth	28	mesophilic
30273	positive	growth	15-37
30273	positive	optimum	28	mesophilic
67770	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
30273	positive	optimum	7
30273	positive	growth	07-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	92.229
125439	obligate aerobe	98.7

Spore formation

@ref	Spore formation	Confidence
30273
125438		90.884

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30273	NaCl	positive	growth	0-25 %
30273	NaCl	positive	optimum	1-3 %

Observation

@ref	Observation
30273	aggregates in chains
67770	quinones: MK-9(H₆), MK-9(H₈)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30273	22599 ChEBI	arabinose	+	carbon source
30273	17057 ChEBI	cellobiose	+	carbon source
30273	28757 ChEBI	fructose	+	carbon source
30273	28260 ChEBI	galactose	+	carbon source
30273	17234 ChEBI	glucose	+	carbon source
30273	29864 ChEBI	mannitol	+	carbon source
30273	37684 ChEBI	mannose	+	carbon source
30273	28053 ChEBI	melibiose	+	carbon source
30273	16634 ChEBI	raffinose	+	carbon source
30273	17992 ChEBI	sucrose	+	carbon source
30273	27082 ChEBI	trehalose	+	carbon source
30273	53424 ChEBI	tween 20	+	carbon source
30273	53423 ChEBI	tween 40	+	carbon source
30273	53426 ChEBI	tween 80	+	carbon source
30273	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30273	catalase	+	1.11.1.6
30273	urease	+	3.5.1.5

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	coenzyme A metabolism	100	4 of 4
66794	aerobactin biosynthesis	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	valine metabolism	100	9 of 9
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	denitrification	100	2 of 2
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	teichoic acid biosynthesis	100	1 of 1
66794	adipate degradation	100	2 of 2
66794	glycine betaine biosynthesis	100	5 of 5
66794	biotin biosynthesis	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	hydrogen production	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
66794	myo-inositol biosynthesis	100	10 of 10
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	aspartate and asparagine metabolism	100	9 of 9
66794	folate polyglutamylation	100	1 of 1
66794	threonine metabolism	100	10 of 10
66794	cardiolipin biosynthesis	100	7 of 7
66794	cellulose degradation	100	5 of 5
66794	palmitate biosynthesis	100	22 of 22
66794	kanosamine biosynthesis II	100	2 of 2
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	gluconeogenesis	100	8 of 8
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	acetate fermentation	100	4 of 4
66794	phenylalanine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	proline metabolism	90.91	10 of 11
66794	Entner Doudoroff pathway	90	9 of 10
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	d-mannose degradation	88.89	8 of 9
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	heme metabolism	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	vitamin B12 metabolism	85.29	29 of 34
66794	vitamin B1 metabolism	84.62	11 of 13
66794	leucine metabolism	84.62	11 of 13
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	factor 420 biosynthesis	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	glycogen metabolism	80	4 of 5
66794	starch degradation	80	8 of 10
66794	purine metabolism	79.79	75 of 94
66794	alanine metabolism	79.31	23 of 29
66794	tryptophan metabolism	78.95	30 of 38
66794	glutathione metabolism	78.57	11 of 14
66794	allantoin degradation	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	methionine metabolism	76.92	20 of 26
66794	urea cycle	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	sulfopterin metabolism	75	3 of 4
66794	arginine metabolism	75	18 of 24
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	isoleucine metabolism	75	6 of 8
66794	cyclohexanol degradation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	lipid metabolism	74.19	23 of 31
66794	pyrimidine metabolism	73.33	33 of 45
66794	metabolism of disaccharids	72.73	8 of 11
66794	oxidative phosphorylation	72.53	66 of 91
66794	histidine metabolism	72.41	21 of 29
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	degradation of pentoses	71.43	20 of 28
66794	isoprenoid biosynthesis	69.23	18 of 26
66794	degradation of sugar alcohols	68.75	11 of 16
66794	enterobactin biosynthesis	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
66794	IAA biosynthesis	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	cysteine metabolism	66.67	12 of 18
66794	octane oxidation	66.67	2 of 3
66794	tyrosine metabolism	64.29	9 of 14
66794	citric acid cycle	64.29	9 of 14
66794	d-xylose degradation	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	ketogluconate metabolism	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	lysine metabolism	61.9	26 of 42
66794	lipoate biosynthesis	60	3 of 5
66794	glycine metabolism	60	6 of 10
66794	aclacinomycin biosynthesis	57.14	4 of 7
66794	degradation of hexoses	55.56	10 of 18
66794	carotenoid biosynthesis	54.55	12 of 22
66794	cholesterol biosynthesis	54.55	6 of 11
66794	sulfate reduction	53.85	7 of 13
66794	3-phenylpropionate degradation	53.33	8 of 15
66794	polyamine pathway	52.17	12 of 23
66794	CMP-KDO biosynthesis	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	carnitine metabolism	50	4 of 8
66794	toluene degradation	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	degradation of sugar acids	48	12 of 25
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	ascorbate metabolism	45.45	10 of 22
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	nitrate assimilation	44.44	4 of 9
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	propanol degradation	42.86	3 of 7
66794	arachidonate biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	3-chlorocatechol degradation	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	vitamin B6 metabolism	36.36	4 of 11
66794	phenol degradation	35	7 of 20
66794	sulfoquinovose degradation	33.33	1 of 3
66794	methanogenesis from CO2	33.33	4 of 12
66794	lipid A biosynthesis	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	chlorophyll metabolism	33.33	6 of 18
66794	sphingosine metabolism	33.33	2 of 6
66794	mevalonate metabolism	28.57	2 of 7
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	vitamin E metabolism	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	arachidonic acid metabolism	22.22	4 of 18
66794	daunorubicin biosynthesis	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17693	mangrove soil	Hainan province, Wenchang, Qinglan Harbour	China	CHN	Asia
67770	Composite mangrove soil in Qinglan Harbour	Wenchang, Hainan Province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence HQ660227 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	1
Soil Samples	17
Animal Samples	4
Plant Samples	2
Total Samples	24

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17693	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2675903055 annotated assembly for Streptomyces qinglanensis CGMCC 4.6825	scaffold	GCA_900111245	943816.5	2675903055	943816	71.96
67770	ASM326566v1 assembly for Streptomyces qinglanensis 172205	scaffold	GCA_003265665	943816.7	8033748289	943816	41.34

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17693	Streptomyces qinglanensis strain 172205 16S ribosomal RNA gene, partial sequence	HQ660227	1487		943816

GC content

@ref	GC-content (mol%)	Method
17693	70.33	high performance liquid chromatography (HPLC)
30273	70.33
67770	72.7	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces qinglanensis CGMCC 4.6825
NCBI: GCA_900111245

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	86.60	no
125439	motility	BacteriaNetⓘ	no	85.80	no
125439	gram_stain	BacteriaNetⓘ	positive	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces qinglanensis strain CGMCC 4.6825
PATRIC: 943816.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.75	no
125438	anaerobic	anaerobicⓘ	no	92.34	no
125438	aerobic	aerobicⓘ	yes	92.23	no
125438	spore-forming	spore-formingⓘ	yes	90.88	no
125438	thermophilic	thermophileⓘ	no	94.00	yes
125438	flagellated	motile2+ⓘ	no	89.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Nitric oxide synthase-guided genome mining identifies a cytochrome P450 enzyme for olefin nitration in bacterial specialized metabolism.	Li H, Li W, Song K, Liu Y, Zhao G, Du YL.	Synth Syst Biotechnol	10.1016/j.synbio.2024.01.005	2024
	Biocatalytic Strategies for Nitration Reactions.	Wang X, Aleotti M, Hall M, Cong Z.	JACS Au	10.1021/jacsau.4c00994	2025
Pathogenicity	Bioactive Molecules from Mangrove Streptomyces qinglanensis 172205.	Xu D, Tian E, Kong F, Hong K	Mar Drugs	10.3390/md18050255	2020
Genetics	Genotype-driven isolation of enterocin with novel bioactivities from mangrove-derived Streptomyces qinglanensis 172205.	Xu DB, Ma M, Deng ZX, Hong K	Appl Microbiol Biotechnol	10.1007/s00253-015-6574-5	2015
Enzymology	PreQ0 base, an unusual metabolite with anti-cancer activity from Streptomyces qinglanensis 172205.	Xu D, Ma M, Liu Y, Zhou T, Wang K, Deng Z, Hong K	Anticancer Agents Med Chem	10.2174/1871520614666141027144653	2015
Phylogeny	Streptomyces gobiensis sp. nov., an antimicrobial producing actinobacterium isolated from soil under black Gobi rocks.	Wen Y, Zhang G, Bahadur A, Liu Y, Zhang Z, Chen T, Liu G, Zhang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.005318	2022
Phylogeny	Streptomyces spirodelae sp. nov., isolated from duckweed.	Saimee Y, Duangmal K	Int J Syst Evol Microbiol	10.1099/ijsem.0.005106	2021
Phylogeny	Streptomyces lycii sp. nov., an endogenous actinomycete isolated from Lycium ruthenicum.	Ma L, Zeng H, Xia Z, Luo X, Zhang L, Wan C	Int J Syst Evol Microbiol	10.1099/ijsem.0.004372	2020
Phylogeny	Streptomyces reniochalinae sp. nov. and Streptomyces diacarni sp. nov., from marine sponges.	Li L, Wang J, Zhou YJ, Lin HW, Lu YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003109	2018
Phylogeny	Streptomyces litoralis sp. nov., isolated from a salt water beach.	Ma GQ, Xia ZF, Zhang Y, Wan CX, Luo XX, Zhang LL	Int J Syst Evol Microbiol	10.1099/ijsem.0.001468	2016
Phylogeny	Streptomyces gilvigriseus sp. nov., a novel actinobacterium isolated from mangrove forest soil.	Ser HL, Zainal N, Palanisamy UD, Goh BH, Yin WF, Chan KG, Lee LH	Antonie Van Leeuwenhoek	10.1007/s10482-015-0431-5	2015
Phylogeny	Streptomyces calidiresistens sp. nov., isolated from a hot spring sediment.	Duan YY, Ming H, Dong L, Yin YR, Zhang Y, Zhou EM, Liu L, Nie GX, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-014-0180-x	2014
Phylogeny	Streptomyces qinglanensis sp. nov., isolated from mangrove sediment.	Hu H, Lin HP, Xie Q, Li L, Xie XQ, Hong K	Int J Syst Evol Microbiol	10.1099/ijs.0.032201-0	2011

References

#17693	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42035
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26614	IJSEM 596 2012 ( DOI 10.1099/ijs.0.032201-0 , PubMed 21515699 )
#30273	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26614
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces qinglanensis (DSM 42035, CGMCC 4.6825, 172205)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900111245

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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