Strain identifier

BacDive ID: 16491

Type strain: Yes

Species: Streptomyces brevispora

Strain Designation: BK160

Strain history: <- S. W. Kwon, KACC; KACC 21093

NCBI tax ID(s): 887462 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 18061

BacDive-ID: 16491

DSM-Number: 42059

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Streptomyces brevispora BK160 is an aerobe, spore-forming, mesophilic bacterium that was isolated from hay meadow soil sample.

NCBI tax id

  • NCBI tax id: 887462
  • Matching level: species

strain history

  • @ref: 18061
  • history: <- S. W. Kwon, KACC; KACC 21093

doi: 10.13145/bacdive16491.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces brevispora
  • full scientific name: Streptomyces brevispora Zucchi et al. 2012

@ref: 18061

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces brevispora

full scientific name: Streptomyces brevispora Zucchi et al. 2012

strain designation: BK160

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthconfidence
30151positive0.7-0.9 µm0.7-0.8 µm
69480positive100

multimedia

  • @ref: 18061
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42059.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18061GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
18061OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248)yeshttps://mediadive.dsmz.de/medium/248Name: OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248) Composition: Agar 20.0 g/l Oat flakes 20.0 g/l Yeast extract 2.0 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water
18061STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18061positivegrowth28mesophilic
30151positivegrowth04-37

culture pH

  • @ref: 30151
  • ability: positive
  • type: growth
  • pH: 05-09
  • PH range: alkaliphile

Physiology and metabolism

oxygen tolerance

  • @ref: 30151
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
30151yes
69481yes100
69480yes100

observation

  • @ref: 30151
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3015118403L-arabitol+carbon source
3015117057cellobiose+carbon source
3015128260galactose+carbon source
3015117234glucose+carbon source
3015117306maltose+carbon source
3015128053melibiose+carbon source
3015117814salicin+carbon source
3015130911sorbitol+carbon source

Isolation, sampling and environmental information

isolation

  • @ref: 18061
  • sample type: hay meadow soil sample
  • geographic location: Northumberland, Cockle Park Experimental Farm
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Meadow
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

Safety information

risk assessment

  • @ref: 18061
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18061
  • description: Streptomyces brevispora partial 16S rRNA gene, type strain BK160T
  • accession: FR692104
  • length: 1457
  • database: ena
  • NCBI tax ID: 887462

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces brevispora DSM 42059GCA_007829885contigncbi887462
66792Streptomyces brevispora strain DSM 42059887462.3wgspatric887462
66792Streptomyces brevispora DSM 420592818991477draftimg887462

GC content

  • @ref: 18061
  • GC-content: 69.2
  • method: fluorimetric

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno94.83no
flagellatedno97.555no
gram-positiveyes88.849yes
anaerobicno98.841yes
halophileno92.645no
spore-formingyes93.831no
thermophileno98.381no
glucose-utilyes89.198no
aerobicyes92.251yes
glucose-fermentno89.388no

External links

@ref: 18061

culture collection no.: DSM 42059, KACC 21093, NCIMB 14702

straininfo link

  • @ref: 85524
  • straininfo: 406774

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21478394Streptomyces brevispora sp. nov. and Streptomyces laculatispora sp. nov., actinomycetes isolated from soil.Zucchi TD, Kim BY, Kshetrimayum JD, Weon HY, Kwon SW, Goodfellow MInt J Syst Evol Microbiol10.1099/ijs.0.029991-02011Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Microbial Sensitivity Tests, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/chemistry/*classification/genetics/*isolation & purificationGenetics
Phylogeny27730318Streptomyces caldifontis sp. nov., isolated from a hot water spring of Tatta Pani, Kotli, Pakistan.Amin A, Ahmed I, Khalid N, Osman G, Khan IU, Xiao M, Li WJAntonie Van Leeuwenhoek10.1007/s10482-016-0778-22016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids, Hot Springs/*microbiology, Pakistan, Phylogeny, RNA, Ribosomal, 16S/genetics, Streptomyces/classification/genetics/*isolation & purification/metabolismEnzymology

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
18061Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42059)https://www.dsmz.de/collection/catalogue/details/culture/DSM-42059
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30151Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2650228776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85524Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID406774.1StrainInfo: A central database for resolving microbial strain identifiers