Strain identifier
BacDive ID: 16491
Type strain:
Species: Streptomyces brevispora
Strain Designation: BK160
Strain history: <- S. W. Kwon, KACC; KACC 21093
NCBI tax ID(s): 887462 (species)
General
@ref: 18061
BacDive-ID: 16491
DSM-Number: 42059
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive
description: Streptomyces brevispora BK160 is an aerobe, spore-forming, mesophilic bacterium that was isolated from hay meadow soil sample.
NCBI tax id
- NCBI tax id: 887462
- Matching level: species
strain history
- @ref: 18061
- history: <- S. W. Kwon, KACC; KACC 21093
doi: 10.13145/bacdive16491.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces brevispora
- full scientific name: Streptomyces brevispora Zucchi et al. 2012
@ref: 18061
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces brevispora
full scientific name: Streptomyces brevispora Zucchi et al. 2012
strain designation: BK160
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | confidence |
---|---|---|---|---|
30151 | positive | 0.7-0.9 µm | 0.7-0.8 µm | |
69480 | positive | 100 |
multimedia
- @ref: 18061
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42059.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
18061 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
18061 | OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248) | yes | https://mediadive.dsmz.de/medium/248 | Name: OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248) Composition: Agar 20.0 g/l Oat flakes 20.0 g/l Yeast extract 2.0 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water |
18061 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
18061 | positive | growth | 28 | mesophilic |
30151 | positive | growth | 04-37 |
culture pH
- @ref: 30151
- ability: positive
- type: growth
- pH: 05-09
- PH range: alkaliphile
Physiology and metabolism
oxygen tolerance
- @ref: 30151
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
30151 | yes | |
69481 | yes | 100 |
69480 | yes | 100 |
observation
- @ref: 30151
- observation: aggregates in chains
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30151 | 18403 | L-arabitol | + | carbon source |
30151 | 17057 | cellobiose | + | carbon source |
30151 | 28260 | galactose | + | carbon source |
30151 | 17234 | glucose | + | carbon source |
30151 | 17306 | maltose | + | carbon source |
30151 | 28053 | melibiose | + | carbon source |
30151 | 17814 | salicin | + | carbon source |
30151 | 30911 | sorbitol | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 18061
- sample type: hay meadow soil sample
- geographic location: Northumberland, Cockle Park Experimental Farm
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Agriculture | #Meadow |
#Environmental | #Terrestrial | #Soil |
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
Safety information
risk assessment
- @ref: 18061
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18061
- description: Streptomyces brevispora partial 16S rRNA gene, type strain BK160T
- accession: FR692104
- length: 1457
- database: ena
- NCBI tax ID: 887462
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptomyces brevispora DSM 42059 | GCA_007829885 | contig | ncbi | 887462 |
66792 | Streptomyces brevispora strain DSM 42059 | 887462.3 | wgs | patric | 887462 |
66792 | Streptomyces brevispora DSM 42059 | 2818991477 | draft | img | 887462 |
GC content
- @ref: 18061
- GC-content: 69.2
- method: fluorimetric
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | no | 94.83 | no |
flagellated | no | 97.555 | no |
gram-positive | yes | 88.849 | yes |
anaerobic | no | 98.841 | yes |
halophile | no | 92.645 | no |
spore-forming | yes | 93.831 | no |
thermophile | no | 98.381 | no |
glucose-util | yes | 89.198 | no |
aerobic | yes | 92.251 | yes |
glucose-ferment | no | 89.388 | no |
External links
@ref: 18061
culture collection no.: DSM 42059, KACC 21093, NCIMB 14702
straininfo link
- @ref: 85524
- straininfo: 406774
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 21478394 | Streptomyces brevispora sp. nov. and Streptomyces laculatispora sp. nov., actinomycetes isolated from soil. | Zucchi TD, Kim BY, Kshetrimayum JD, Weon HY, Kwon SW, Goodfellow M | Int J Syst Evol Microbiol | 10.1099/ijs.0.029991-0 | 2011 | Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Microbial Sensitivity Tests, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/chemistry/*classification/genetics/*isolation & purification | Genetics |
Phylogeny | 27730318 | Streptomyces caldifontis sp. nov., isolated from a hot water spring of Tatta Pani, Kotli, Pakistan. | Amin A, Ahmed I, Khalid N, Osman G, Khan IU, Xiao M, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-016-0778-2 | 2016 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids, Hot Springs/*microbiology, Pakistan, Phylogeny, RNA, Ribosomal, 16S/genetics, Streptomyces/classification/genetics/*isolation & purification/metabolism | Enzymology |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
18061 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42059) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42059 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
30151 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26502 | 28776041 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
85524 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID406774.1 | StrainInfo: A central database for resolving microbial strain identifiers |