Name: Streptomyces axinellae Pol001
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16458

Type strain:

Species: Streptomyces axinellae

Strain Designation: Pol001, P01001

Culture col. no.: DSM 41948, CIP 109838, JCM 16373

Strain history: CIP <- 2008, M. Schenermayer, Würzburg Univ., Würzburg, Germany <- S.M. Pimentel-Elardo, Würzburg Univ., Würzburg, Germany: strain P01001

NCBI tax ID(s): 552788 (species)

SI-ID 362857

CIP 109838, DSM 41948, JCM 16373

Special Collections

Section

Streptomyces axinellae Pol001 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from Mediterranean sponge Axinella polypoides.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces axinellae**
	Full Scientific Name (LPSN)	Streptomyces axinellae Pimentel-Elardo et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29170]	Gram stain	positive
[Ref.: #116685]	Gram stain	positive

[Ref.: #116685]	Cell shape	rod-shaped

[Ref.: #116685]	Motility	no

[Ref.: #29170]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15800]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #15800]

Culture medium growth

[Ref.: #15800]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15800]

Culture medium composition

expand / minimize

[Ref.: #37856]

Culture medium

MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum

[Ref.: #37856]

Culture medium growth

[Ref.: #37856]

Culture medium composition

expand / minimize

[Ref.: #15800]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #15800]

Culture medium growth

[Ref.: #15800]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15800]

Culture medium composition

expand / minimize

[Ref.: #15800]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #15800]

Culture medium growth

[Ref.: #15800]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15800]

Culture medium composition

expand / minimize

[Ref.: #116685]

Culture medium

CIP Medium 57

[Ref.: #116685]

Culture medium growth

[Ref.: #116685]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #15800]	growth	28 °C
[Ref.: #29170]	growth	20-37 °C
[Ref.: #29170]	optimum	30 °C
[Ref.: #37856]	growth	30 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29170]	Oxygen tolerance	aerobe
[Ref.: #116685]	Oxygen tolerance	obligate aerobe

[Ref.: #29170]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29170]		NaCl		growth	0-7.5	%
[Ref.: #29170]		NaCl		optimum	1.25	%

[Ref.: #29170]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9(H₆)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29170]	alanine ChEBI	+	carbon source
[Ref.: #29170]	cellobiose ChEBI	+	carbon source
[Ref.: #29170]	dextrin ChEBI	+	carbon source
[Ref.: #29170]	fructose ChEBI	+	carbon source
[Ref.: #29170]	galactose ChEBI	+	carbon source
[Ref.: #29170]	gelatin ChEBI	+	carbon source
[Ref.: #29170]	gluconate ChEBI	+	carbon source
[Ref.: #29170]	glucosamine ChEBI	+	carbon source
[Ref.: #29170]	glucose ChEBI	+	carbon source
[Ref.: #29170]	glutamate ChEBI	+	carbon source
[Ref.: #29170]	glycerol ChEBI	+	carbon source
[Ref.: #29170]	L-alaninamide ChEBI	+	carbon source
[Ref.: #29170]	L-arabitol ChEBI	+	carbon source
[Ref.: #29170]	lactose ChEBI	+	carbon source
[Ref.: #29170]	mannitol ChEBI	+	carbon source
[Ref.: #29170]	mannose ChEBI	+	carbon source
[Ref.: #116685]	nitrate ChEBI	+	reduction
[Ref.: #116685]	nitrite ChEBI	-	reduction
[Ref.: #29170]	propionate ChEBI	+	carbon source
[Ref.: #29170]	rhamnose ChEBI	+	carbon source
[Ref.: #29170]	ribose ChEBI	+	carbon source
[Ref.: #29170]	serine ChEBI	+	carbon source
[Ref.: #29170]	tween 40 ChEBI	+	carbon source
[Ref.: #29170]	tween 80 ChEBI	+	carbon source
[Ref.: #29170]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #116685]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116685]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116685]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116685]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116685]	12149	-	+	+	+	-	+	-	-	-	-	+	+	-	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15800]	Sample type/isolated from	Mediterranean sponge Axinella polypoides
[Ref.: #15800]	Host species	Axinella polypoides
[Ref.: #15800]	Geographic location (country and/or sea, region)	Banyuls-sur-Mer
[Ref.: #15800]	Country	France
[Ref.: #15800]	Country ISO 3 Code	FRA
[Ref.: #15800]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Mediterranean sponge Axinella polypoides
[Ref.: #67770]	Host species	Axinella polypoides
[Ref.: #67770]	Geographic location (country and/or sea, region)	Banyuls-sur-Mer
[Ref.: #67770]	Country	France
[Ref.: #67770]	Country ISO 3 Code	FRA
[Ref.: #67770]	Continent	Europe

[Ref.: #116685]	Sample type/isolated from	Animal, Marine sponge, Axinella polypoides
[Ref.: #116685]	Geographic location (country and/or sea, region)	Banuyls sur mer
[Ref.: #116685]	Country	France
[Ref.: #116685]	Country ISO 3 Code	FRA
[Ref.: #116685]	Continent	Europe
[Ref.: #116685]	Isolation date	2003
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Porifera (Sponges)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15800]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116685]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15800]	Streptomyces axinellae strain Pol001 16S ribosomal RNA gene, partial sequence	EU683612	1422	GenBank ENA	552788 tax ID

[Ref.: #15800]	GC-content	71.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29170]	GC-content	71 mol%
[Ref.: #67770]	GC-content	71 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #15800]

Culture collection no.

DSM 41948, CIP 109838, JCM 16373

[Ref.: #85494]

SI-ID 362857

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	New tetromycin derivatives with anti-trypanosomal and protease inhibitory activities.	Pimentel-Elardo SM, Buback V, Gulder TA, Bugni TS, Reppart J, Bringmann G, Ireland CM, Schirmeister T, Hentschel U	Mar Drugs	10.3390/md9101682	2011	*
Phylogeny	Streptomyces axinellae sp. nov., isolated from the Mediterranean sponge Axinella polypoides (Porifera).	Pimentel-Elardo SM, Scheuermayer M, Kozytska S, Hentschel U	Int J Syst Evol Microbiol	10.1099/ijs.0.007856-0	2009	*

References

#15800

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41948

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29170

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25594 (see below)

#37856 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#85494

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID362857.1 )

#116685 Collection of Institut Pasteur ; Curators of the CIP; CIP 109838

#25594

IJSEM 1433 2009 ( DOI 10.1099/ijs.0.007856-0 , PubMed 19502329 )

* These data were automatically processed and therefore are not curated

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