Name: Alistipes communis JCM 32851
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 164389

Type strain:

Species: Alistipes communis

Culture col. no.: JCM 32851

Strain history: M. Sakamoto; RIKEN BRC-JCM, Japan; 6CPBBH3.

NCBI tax ID(s): 2585118 (species)

Special Collections

Other strains from Alistipes communis

Section

Alistipes communis JCM 32851 is an anaerobe, Gram-negative bacterium that was isolated from Feces of a man in the thirties.

Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Rikenellaceae*
	Genus	*Alistipes*
	Species	**Alistipes communis**
	Full Scientific Name (LPSN)	Alistipes communis Sakamoto et al. 2020

Synonym

"Alistipes obesi"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %96.188

[Ref.: #69480]	Motility	no Confidence in %90.875

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %91.826

[Ref.: #69480]	Ability of spore formation	no Confidence in %95.475
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Feces of a man in the thirties
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC468800 (>99% sequence identity) for Alistipes communis subclade from Microbeatlas

Aquatic Samples	1636
Soil Samples	518
Animal Samples	76517
Plant Samples	101
Total Samples	78772

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alistipes communis 6CPBBH3 gene for 16S ribosomal RNA, partial sequence	LC468800	1479	GenBank ENA	2585118 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alistipes communis 6CPBBH3	GCA_006542745	complete	GenBank ENA	2585118 tax ID
[Ref.: #66792]	Alistipes sp. 6CPBBH3	2585756.3	complete	PATRIC	2585118 tax ID	*

[Ref.: #67770]

GC-content

58.4 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alistipes sp. 6CPBBH3 PATRIC: 2585756.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alistipes sp. 6CPBBH3 PATRIC: 2585756.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.188	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	91.826	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	95.475	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	93.957	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.656	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.875	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32851

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Alistipes communis in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Alistipes sp. 6CPBBH3

Alistipes sp. 6CPBBH3

Change proposal

Change proposal