Name: Alistipes communis JCM 32778
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 164356

Type strain:

Species: Alistipes communis

Culture col. no.: JCM 32778, CSUR P186, DSM 25724

Strain history: DSM 25724 <-- P. Hugon; Timone Hosp., France; ph8.

NCBI tax ID(s): 2585118 (species)

Special Collections

Other strains from Alistipes communis

Section

Alistipes communis JCM 32778 is an anaerobe, Gram-negative bacterium that was isolated from Fecal flora of an obese, 26-year-old woman living in Marseille.

Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Rikenellaceae*
	Genus	*Alistipes*
	Species	**Alistipes communis**
	Full Scientific Name (LPSN)	Alistipes communis Sakamoto et al. 2020

Synonym

"Alistipes obesi"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %96.271

[Ref.: #69480]	Motility	no Confidence in %90.375

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %92.72

[Ref.: #69480]

Ability of spore formation

no Confidence in %94.494

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Fecal flora of an obese, 26-year-old woman living in Marseille
[Ref.: #67770]	Geographic location (country and/or sea, region)	Marseilles
[Ref.: #67770]	Country	France
[Ref.: #67770]	Country ISO 3 Code	FRA
[Ref.: #67770]	Continent	Europe
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence JN837494 (>99% sequence identity) for Alistipes communis subclade from Microbeatlas

Aquatic Samples	1636
Soil Samples	518
Animal Samples	76517
Plant Samples	101
Total Samples	78772

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alistipes communis strain ph8 16S ribosomal RNA gene, partial sequence	JN837494	1388	GenBank ENA	2585118 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alistipes communis ph8	GCA_000311925	scaffold	GenBank ENA	2585118 tax ID

[Ref.: #67770]

GC-content

58.6 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alistipes communis ph8 NCBI: GCA_000311925.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.271	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	92.72	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	94.536	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	94.494	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.156	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.375	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32778, CSUR P186, DSM 25724

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Alistipes communis ph8

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