Alistipes communis (DSM 25724, CSUR P186, JCM 32778)

Name: Alistipes communis (DSM 25724, CSUR P186, JCM 32778)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164356

Type strain

Culture col. no. DSM 25724 CSUR P186 JCM 32778

NCBI tax ID(s) 2585118

Special Collections DSMZ JCM Cadoret human gut

History DSM 25724 <-- P. Hugon; Timone Hosp., France; ph8.

Links

Alistipes communis JCM 32778 is a bacterium that was isolated from Fecal flora of an obese, 26-year-old woman living in Marseille.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 393347

JCM 32778

@ref 20215

Last LPSN update 2026-02-09 11:39:50

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Rikenellaceae

Genus Alistipes

Species Alistipes communis

Full scientific name Alistipes communis Sakamoto et al. 2020

Synonyms (1)

"Alistipes obesi"

BacDive ID	Other strains from **Alistipes communis** (2)	Type strain
159608	A. communis 5CBH24, DSM 108979, JCM 32850 (type strain)
164389	A. communis JCM 32851

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	90.375
125438	96.271	negative
125439	99.4	negative

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	anaerobe	92.72
125439	anaerobe	97.5

Spore formation

@ref	Spore formation	Confidence
125438		94.494
125439		99.7

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Fecal flora of an obese, 26-year-old woman living in Marseille	Marseilles	France	FRA	Europe

Taxonmaps

69479

Global distribution of 16S sequence JN837494 (>99% sequence identity) for Alistipes communis subclade from Microbeatlas

Aquatic Samples	1636
Soil Samples	518
Animal Samples	76517
Plant Samples	101
Total Samples	78772

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM31192v1 assembly for Alistipes communis ph8	scaffold	GCA_000311925	1118061.3	2547132153	2585118	65.4

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Alistipes communis strain ph8 16S ribosomal RNA gene, partial sequence	JN837494	1388		2585118

GC content

@ref	GC-content (mol%)	Method
67770	58.6	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Alistipes communis ph8
NCBI: GCA_000311925

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.70	no
125439	motility	BacteriaNetⓘ	yes	57.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	97.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alistipes communis ph8
NCBI: GCA_000311925.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.27	no
125438	anaerobic	anaerobicⓘ	yes	92.72	no
125438	aerobic	aerobicⓘ	no	94.54	no
125438	spore-forming	spore-formingⓘ	no	94.49	no
125438	thermophilic	thermophileⓘ	no	95.16	yes
125438	flagellated	motile2+ⓘ	no	90.38	no

Literature

Title	Authors	Journal	DOI	Year
The Genus Alistipes: Gut Bacteria With Emerging Implications to Inflammation, Cancer, and Mental Health.	Parker BJ, Wearsch PA, Veloo ACM, Rodriguez-Palacios A.	Front Immunol	10.3389/fimmu.2020.00906	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Alistipes communis (DSM 25724, CSUR P186, JCM 32778)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000311925

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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