Name: Alistipes communis JCM 32778
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164356

Type strain:

Species: Alistipes communis

Culture col. no.: JCM 32778, CSUR P186, DSM 25724

Strain history: DSM 25724 <-- P. Hugon; Timone Hosp., France; ph8.

NCBI tax ID(s): 2585118 (species)

Other strains from Alistipes communis

A. communis 5CBH24, DSM 108979, JCM 32850 (type strain)
A. communis JCM 32851

Section

Alistipes communis JCM 32778 is a mesophilic bacterium that was isolated from Fecal flora of an obese, 26-year-old woman living in Marseille.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Rikenellaceae*
	Genus	*Alistipes*
	Species	**Alistipes communis**
	Full Scientific Name (LPSN)	Alistipes communis Sakamoto et al. 2020

Synonym

"Alistipes obesi"

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Fecal flora of an obese, 26-year-old woman living in Marseille
[Ref.: #67770]	Geographic location (country and/or sea, region)	Marseilles
[Ref.: #67770]	Country	France
[Ref.: #67770]	Country ISO 3 Code	FRA
[Ref.: #67770]	Continent	Europe
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence JN837494 (>99% sequence identity) for Alistipes communis subclade from Microbeatlas

Aquatic Samples	1636
Soil Samples	518
Animal Samples	76517
Plant Samples	101
Total Samples	78772

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alistipes obesi strain ph8 16S ribosomal RNA gene, partial sequence	JN837494	1388	ENA	2585118 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alistipes communis ph8	GCA_000311925	scaffold	GenBank	2585118 tax ID

[Ref.: #67770]

GC-content

58.6 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alistipes communis ph8 NCBI: GCA_000311925.1
[Ref.: #69480]	motile	no	89.974	no
[Ref.: #69480]	flagellated	no	96.439	no
[Ref.: #69480]	gram-positive	no	98.333	no
[Ref.: #69480]	anaerobic	yes	98.653	no
[Ref.: #69480]	aerobic	no	96.787	no
[Ref.: #69480]	halophile	no	86.419	no
[Ref.: #69480]	spore-forming	no	97.528	no
[Ref.: #69480]	glucose-util	yes	85.24	no
[Ref.: #69480]	thermophile	no	97.866	yes
[Ref.: #69480]	glucose-ferment	yes	57.659	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32778, CSUR P186, DSM 25724

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Alistipes communis ph8

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