Strain identifier

BacDive ID: 164356

Type strain: No

Species: Alistipes communis

Strain history: DSM 25724 <-- P. Hugon; Timone Hosp., France; ph8.

NCBI tax ID(s): 2585118 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9 (current version):
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 9 (current version)

General

@ref: 67770

BacDive-ID: 164356

DSM-Number: 25724

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-negative

description: Alistipes communis JCM 32778 is an anaerobe, Gram-negative bacterium that was isolated from Fecal flora of an obese, 26-year-old woman living in Marseille.

NCBI tax id

  • NCBI tax id: 2585118
  • Matching level: species

strain history

  • @ref: 67770
  • history: DSM 25724 <-- P. Hugon; Timone Hosp., France; ph8.

doi: 10.13145/bacdive164356.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Rikenellaceae
  • genus: Alistipes
  • species: Alistipes communis
  • full scientific name: Alistipes communis Sakamoto et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Alistipes obesi

@ref: 67770

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Rikenellaceae

genus: Alistipes

species: Alistipes communis

full scientific name: Alistipes communis Sakamoto et al. 2020

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 98.333

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: anaerobe
  • confidence: 98.653

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 97.528

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Fecal flora of an obese, 26-year-old woman living in Marseille
  • geographic location: Marseilles
  • country: France
  • origin.country: FRA
  • continent: Europe

taxonmaps

  • @ref: 69479
  • File name: preview.99_776.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_110;96_471;97_538;98_619;99_776&stattab=map
  • Last taxonomy: Alistipes communis subclade
  • 16S sequence: JN837494
  • Sequence Identity:
  • Total samples: 78772
  • soil counts: 518
  • aquatic counts: 1636
  • animal counts: 76517
  • plant counts: 101

Sequence information

16S sequences

  • @ref: 67770
  • description: Alistipes communis strain ph8 16S ribosomal RNA gene, partial sequence
  • accession: JN837494
  • length: 1388
  • database: nuccore
  • NCBI tax ID: 2585118

Genome sequences

  • @ref: 67770
  • description: Alistipes communis ph8
  • accession: GCA_000311925
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 2585118

GC content

  • @ref: 67770
  • GC-content: 58.6
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno89.974no
flagellatedno96.439no
gram-positiveno98.333no
anaerobicyes98.653no
aerobicno96.787no
halophileno86.419no
spore-formingno97.528no
glucose-utilyes85.24no
thermophileno97.866yes
glucose-fermentyes57.659no

External links

@ref: 67770

culture collection no.: JCM 32778, CSUR P186, DSM 25724

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes