Strain identifier

BacDive ID: 164389

Type strain: No

Species: Alistipes communis

Strain history: M. Sakamoto; RIKEN BRC-JCM, Japan; 6CPBBH3.

NCBI tax ID(s): 2585118 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 164389

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-negative

description: Alistipes communis JCM 32851 is an anaerobe, Gram-negative bacterium that was isolated from Feces of a man in the thirties.

NCBI tax id

  • NCBI tax id: 2585118
  • Matching level: species

strain history

  • @ref: 67770
  • history: M. Sakamoto; RIKEN BRC-JCM, Japan; 6CPBBH3.

doi: 10.13145/bacdive164389.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Rikenellaceae
  • genus: Alistipes
  • species: Alistipes communis
  • full scientific name: Alistipes communis Sakamoto et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Alistipes obesi

@ref: 67770

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Rikenellaceae

genus: Alistipes

species: Alistipes communis

full scientific name: Alistipes communis Sakamoto et al. 2020

type strain: no

Morphology

cell morphology

@refgram stainconfidencemotility
69480negative98.281
6948090.479no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: anaerobe
  • confidence: 98.86

spore formation

@refspore formationconfidence
69480no97.553
69481no100

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Feces of a man in the thirties
  • country: Japan
  • origin.country: JPN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_776.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_110;96_471;97_538;98_619;99_776&stattab=map
  • Last taxonomy: Alistipes communis subclade
  • 16S sequence: LC468800
  • Sequence Identity:
  • Total samples: 78772
  • soil counts: 518
  • aquatic counts: 1636
  • animal counts: 76517
  • plant counts: 101

Sequence information

16S sequences

  • @ref: 67770
  • description: Alistipes communis 6CPBBH3 gene for 16S ribosomal RNA, partial sequence
  • accession: LC468800
  • length: 1479
  • database: nuccore
  • NCBI tax ID: 2585118

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Alistipes sp. 6CPBBH32585756.3completepatric2585118
67770Alistipes communis 6CPBBH3GCA_006542745completencbi2585118

GC content

  • @ref: 67770
  • GC-content: 58.4
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno90.479no
gram-positiveno98.281no
anaerobicyes98.86no
aerobicno97.442no
halophileno82.324no
spore-formingno97.553no
glucose-utilyes85.318no
thermophileno98.065yes
flagellatedno96.711no
glucose-fermentyes56.521no

External links

@ref: 67770

culture collection no.: JCM 32851

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1