Nocardioides seonyuensis (KCTC 49176, JCM 32832)

Name: Nocardioides seonyuensis (KCTC 49176, JCM 32832)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164376

Type strain

Culture col. no. KCTC 49176 JCM 32832

NCBI tax ID(s) 2518371

Special Collections JCM KCTC

History JCM <-- S. B. Kim; Chungnam Natl. Univ., South Korea; MMS17-SY207-3.

Links

Nocardioides seonyuensis JCM 32832 is a bacterium that was isolated from Sandy soil sampled around a beach on Seonyu Island.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27521

KCTC 49176,JCM 32832

@ref 20215

Last LPSN update 2026-05-29 08:45:24

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Nocardioidaceae

Genus Nocardioides

Species Nocardioides seonyuensis

Full scientific name Nocardioides seonyuensis Roh et al. 2020

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125439		90.332
125439		99.444	positive

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.185

Observation

67770

Observationquinones: MK-8(H₄)

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Sandy soil sampled around a beach on Seonyu Island	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence MG385709 (>99% sequence identity) for Nocardioides from Microbeatlas

Aquatic Samples	3
Soil Samples	33
Animal Samples	68
Plant Samples	1
Total Samples	105

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM468396v1 assembly for Nocardioides seonyuensis MMS17-SY207-3	complete	GCA_004683965	2518371.3	2841408144	2518371	96.45

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Nocardioides sp. strain MMS17-SY207-3 16S ribosomal RNA gene, partial sequence	MG385709	1360		35761

GC content

@ref	GC-content (mol%)	Method
67770	70.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM468396v1 assembly for Nocardioides seonyuensis MMS17-SY207-3
NCBI: GCA_004683965

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.19	no
125439	motility	BacteriaNetⓘ	no	90.33	no
125439	gram_stain	BacteriaNetⓘ	positive	99.44	no
125439	spore_formation	BacteriaNetⓘ	no	76.41	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides euryhalodurans sp. nov., Nocardioides seonyuensis sp. nov. and Nocardioides eburneiflavus sp. nov., isolated from soil.	Roh SG, Lee C, Kim MK, Kang HJ, Kim YS, Kim MJ, Malik A, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.004095	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

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Nocardioides seonyuensis (KCTC 49176, JCM 32832)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_004683965

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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