Nocardioides eburneiflavus (KCTC 49177, JCM 32833)

Name: Nocardioides eburneiflavus (KCTC 49177, JCM 32833)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164377

Type strain

Culture col. no. KCTC 49177 JCM 32833

NCBI tax ID(s) 2518372

Special Collections JCM KCTC

History JCM <-- S. B. Kim; Chungnam Natl. Univ., South Korea; MMS17-SY213.

Links

Nocardioides eburneiflavus JCM 32833 is a bacterium that was isolated from Sandy soil sampled around a beach on Seonyu Island.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 24867

KCTC 49177,JCM 32833

@ref 20215

Last LPSN update 2026-05-29 08:45:24

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Nocardioidaceae

Genus Nocardioides

Species Nocardioides eburneiflavus

Full scientific name Nocardioides eburneiflavus Roh et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	98.794
125438	positive	91.848

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.982
125438	aerobe	92.097

Observation

67770

Observationquinones: MK-8(H₄)

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Sandy soil sampled around a beach on Seonyu Island	Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM478579v1 assembly for Nocardioides eburneiflavus MMS17-SY213	contig	GCA_004785795	2518372.3	2899974377	2518372	77.21

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Nocardioides eburneiflavus strain MMS17-SY213 16S ribosomal RNA gene, partial sequence	MH166742	1461		2518372

GC content

@ref	GC-content (mol%)	Method
67770	71.5	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM478579v1 assembly for Nocardioides eburneiflavus MMS17-SY213
NCBI: GCA_004785795

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.98	no
125439	gram_stain	BacteriaNetⓘ	positive	98.79	no
125439	spore_formation	BacteriaNetⓘ	no	81.75	no
125439	motility	BacteriaNetⓘ	no	82.58	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nocardioides eburneiflavus MMS17-SY213
NCBI: GCA_004785795.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.85	no
125438	anaerobic	anaerobicⓘ	no	96.39	no
125438	aerobic	aerobicⓘ	yes	92.10	no
125438	spore-forming	spore-formingⓘ	no	62.86	no
125438	thermophilic	thermophileⓘ	no	97.49	yes
125438	flagellated	motile2+ⓘ	no	86.67	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides euryhalodurans sp. nov., Nocardioides seonyuensis sp. nov. and Nocardioides eburneiflavus sp. nov., isolated from soil.	Roh SG, Lee C, Kim MK, Kang HJ, Kim YS, Kim MJ, Malik A, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.004095	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nocardioides eburneiflavus (KCTC 49177, JCM 32833)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_004785795

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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