Strain identifier
BacDive ID: 164376
Type strain:
Species: Nocardioides seonyuensis
Strain history: S. B. Kim; Chungnam Natl. Univ., South Korea; MMS17-SY207-3.
NCBI tax ID(s): 2518371 (species)
General
@ref: 67770
BacDive-ID: 164376
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Nocardioides seonyuensis JCM 32832 is a mesophilic bacterium that was isolated from Sandy soil sampled around a beach on Seonyu Island.
NCBI tax id
- NCBI tax id: 2518371
- Matching level: species
strain history
- @ref: 67770
- history: S. B. Kim; Chungnam Natl. Univ., South Korea; MMS17-SY207-3.
doi: 10.13145/bacdive164376.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Nocardioidaceae
- genus: Nocardioides
- species: Nocardioides seonyuensis
- full scientific name: Nocardioides seonyuensis Roh et al. 2020
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Propionibacteriales
family: Nocardioidaceae
genus: Nocardioides
species: Nocardioides seonyuensis
full scientific name: Nocardioides seonyuensis Roh et al. 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-8(H4)
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Sandy soil sampled around a beach on Seonyu Island
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_60503.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_142;96_26607;97_33407;98_42939;99_60503&stattab=map
- Last taxonomy: Nocardioides
- 16S sequence: MG385709
- Sequence Identity:
- Total samples: 105
- soil counts: 33
- aquatic counts: 3
- animal counts: 68
- plant counts: 1
Sequence information
16S sequences
- @ref: 67770
- description: Nocardioides sp. strain MMS17-SY207-3 16S ribosomal RNA gene, partial sequence
- accession: MG385709
- length: 1360
- database: ena
- NCBI tax ID: 35761
Genome sequences
- @ref: 67770
- description: Nocardioides seonyuensis MMS17-SY207-3
- accession: GCA_004683965
- assembly level: complete
- database: ncbi
- NCBI tax ID: 2518371
GC content
- @ref: 67770
- GC-content: 70.4
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 67770
culture collection no.: JCM 32832, KCTC 49176
literature
- topic: Phylogeny
- Pubmed-ID: 32141810
- title: Nocardioides euryhalodurans sp. nov., Nocardioides seonyuensis sp. nov. and Nocardioides eburneiflavus sp. nov., isolated from soil.
- authors: Roh SG, Lee C, Kim MK, Kang HJ, Kim YS, Kim MJ, Malik A, Kim SB
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004095
- year: 2020
- mesh: Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sand/microbiology, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |