Name: Phascolarctobacterium faecium JCM 30894
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 163901

Type strain:

Species: Phascolarctobacterium faecium

Culture col. no.: JCM 30894

Strain history: M. Sakamoto; RIKEN BRC-JCM, Japan; CBH30.

NCBI tax ID(s): 33025 (species)

Special Collections

Other strains from Phascolarctobacterium faecium

Section

Phascolarctobacterium faecium JCM 30894 is an anaerobe, Gram-negative bacterium that was isolated from Feces of a man in the forties.

Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Negativicutes*
	Order	*Acidaminococcales*
	Family	*Acidaminococcaceae*
	Genus	*Phascolarctobacterium*
	Species	**Phascolarctobacterium faecium**
	Full Scientific Name (LPSN)	Phascolarctobacterium faecium Del Dot et al. 1994

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %90.269

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Feces of a man in the forties
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC071791 (>99% sequence identity) for Phascolarctobacterium faecium from Microbeatlas

Aquatic Samples	7831
Soil Samples	1819
Animal Samples	143422
Plant Samples	621
Total Samples	153693

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Phascolarctobacterium faecium gene for 16S ribosomal RNA, partial sequence, strain: JCM 30894	LC071791	1459	GenBank ENA	33025 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Phascolarctobacterium faecium JCM 30894	GCA_003945365	complete	GenBank ENA	33025 tax ID	*
[Ref.: #66792]	Phascolarctobacterium faecium strain JCM 30894	33025.13	complete	PATRIC	33025 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Phascolarctobacterium faecium JCM 30894 NCBI: GCA_003945365.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	83.999	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	90.269	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	91.83	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	73.191	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	89.391	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	81.964	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30894

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of Phascolarctobacterium faecium JCM 30894, a Succinate-Utilizing Bacterium Isolated from Human Feces.	Ogata Y, Suda W, Ikeyama N, Hattori M, Ohkuma M, Sakamoto M	Microbiol Resour Announc	10.1128/MRA.01487-18	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Phascolarctobacterium faecium in external resources:
SILVA
BRENDA
PANGAEA
GBIF