Name: Phascolarctobacterium faecium QUM 3679
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 100

Type strain:

Species: Phascolarctobacterium faecium

Strain Designation: QUM 3679

Culture col. no.: DSM 14760, ACM 3679

Strain history: <- R. Osawa, Kobe University, Graduate School of Science and Technology, Kobe, Japan; ACM 3679 <- ACM <- R. Osawa, Veterinary Service and Research, Brisbane, Australia {1992}

NCBI tax ID(s): 1122957 (strain), 33025 (species)

SI-ID 87670

ACM3679, DSM 14760

Other strains from Phascolarctobacterium faecium

P. faecium QUM 3680, DSM 14761, ACM 3680
P. faecium QUM 3681, DSM 14762, ACM 3681
P. faecium JCM 30894
P. faecium JCM 30895

Section

Phascolarctobacterium faecium QUM 3679 is an anaerobe, mesophilic bacterium that was isolated from koala faeces.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Negativicutes*
	Order	*Acidaminococcales*
	Family	*Acidaminococcaceae*
	Genus	*Phascolarctobacterium*
	Species	**Phascolarctobacterium faecium**
	Full Scientific Name (LPSN)	Phascolarctobacterium faecium Del Dot et al. 1994

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5523]

Culture medium

PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)

[Ref.: #5523]

Culture medium growth

[Ref.: #5523]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5523]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5523]			growth	37 °C

[Ref.: #5523]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5523]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5523]	Sample type/isolated from	koala faeces
[Ref.: #5523]	Country	Australia
[Ref.: #5523]	Country ISO 3 Code	AUS
[Ref.: #5523]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Host	#Mammals	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5523]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5523]	P.faecium (ACM3679) gene for 16S rRNA	X72865	1511	ENA	33025 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Phascolarctobacterium faecium DSM 14760	GCA_003269275	scaffold	GenBank	1122957 tax ID	*
[Ref.: #66792]	Phascolarctobacterium faecium DSM 14760	1122957.3	wgs	PATRIC	1122957 tax ID	*
[Ref.: #66792]	Phascolarctobacterium faecium DSM 14760	2756170237	draft	JGI IMG/M	1122957 tax ID	*

[Ref.: #5523]

GC-content

41-42 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Phascolarctobacterium faecium DSM 14760 DSM 14760 NCBI: GCA_003269275.1
[Ref.: #69480]	motile	no	83.952	no
[Ref.: #69480]	flagellated	no	95.219	no
[Ref.: #69480]	gram-positive	no	96.011	no
[Ref.: #69480]	anaerobic	yes	99.738	no
[Ref.: #69480]	aerobic	no	98.169	no
[Ref.: #69480]	halophile	no	93.458	no
[Ref.: #69480]	spore-forming	no	82.002	no
[Ref.: #69480]	glucose-util	no	55.66	no
[Ref.: #69480]	thermophile	no	97.853	yes
[Ref.: #69480]	glucose-ferment	no	63.858	no

Availability in culture collections External links

[Ref.: #5523]

Culture collection no.

DSM 14760, ACM 3679

[Ref.: #69783]

SI-ID 87670

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phascolarctobacterium wakonense sp. nov., isolated from common marmoset (Callithrix jacchus) faeces.	Shigeno Y, Kitahara M, Shime M, Benno Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003407	2019	*
Phylogeny	Characterization of Phascolarctobacterium succinatutens sp. nov., an asaccharolytic, succinate-utilizing bacterium isolated from human feces.	Watanabe Y, Nagai F, Morotomi M	Appl Environ Microbiol	10.1128/AEM.06035-11	2011	*

References

#5523

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14760

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69783

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID87670.1 )

* These data were automatically processed and therefore are not curated

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Phascolarctobacterium faecium DSM 14760 DSM 14760

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