Akkermansia muciniphila (JCM 30893)

Name: Akkermansia muciniphila (JCM 30893)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 163900

Type strain

Culture col. no. JCM 30893

NCBI tax ID(s) 239935

Special Collections JCM

History M. Sakamoto; RIKEN BRC-JCM, Japan; CBH12S.

Links

Akkermansia muciniphila JCM 30893 is a bacterium that was isolated from Feces of a man in the forties.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 394154

JCM 30893

@ref 20215

Last LPSN update 2026-02-09 11:39:43

Domain Bacteria

Phylum Verrucomicrobiota

Class Verrucomicrobiia

Order Verrucomicrobiales

Family Akkermansiaceae

Genus Akkermansia

Species Akkermansia muciniphila

Full scientific name Akkermansia muciniphila Derrien et al. 2004

BacDive ID	Other strains from **Akkermansia muciniphila** (2)	Type strain
17849	A. muciniphila Muc, MucT, DSM 22959, ATCC BAA-835, CIP 107961, ... (type strain)
131145	A. muciniphila YL44, DSM 26127

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	95.206
125439	negative	92.9

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	37

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		91.5

Isolation, sampling and environmental information

Isolation

67770

Sample typeFeces of a man in the forties

Taxonmaps

69479

Global distribution of 16S sequence LC071790 (>99% sequence identity) for Akkermansia muciniphila subclade from Microbeatlas

Aquatic Samples	4383
Soil Samples	1656
Animal Samples	128875
Plant Samples	623
Total Samples	135537

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1050923v1 assembly for Akkermansia muciniphila JCM 30893	complete	GCA_010509235	239935.2240		239935	99.55
66792	ASM973157v1 assembly for Akkermansia muciniphila JCM 30893	complete	GCA_009731575	239935.2189	8121599609	239935	99.34

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Akkermansia muciniphila gene for 16S ribosomal RNA, partial sequence, strain: JCM 30893	LC071790	1425		239935

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Akkermansia muciniphila JCM 30893
NCBI: GCA_009731575

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	91.50	no
125439	motility	BacteriaNetⓘ	yes	50.70	no
125439	gram_stain	BacteriaNetⓘ	negative	92.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	87.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Akkermansia muciniphila JCM 30893
NCBI: GCA_009731575.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.21	no
125438	anaerobic	anaerobicⓘ	yes	73.35	no
125438	aerobic	aerobicⓘ	no	83.69	no
125438	spore-forming	spore-formingⓘ	no	88.13	no
125438	thermophilic	thermophileⓘ	no	94.75	yes
125438	flagellated	motile2+ⓘ	no	83.72	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genomic Face-off: An In Silico Comparison of the Probiotic Potential of Lactobacillus spp. and Akkermansia muciniphila.	Fakruddin M, Abu Bakar Karim M, Islam BU, Safa A, Sultana J, Bulbul N, Shishir MA.	Curr Genomics	10.2174/0113892029317403240815044408	2025
	Heterologous Expression and Characterization of Cellouronate (beta-1,4-Glucuronan) Lyase from a Human Intestinal Bacterium Bacteroides luhongzhouii.	Tanaka Y, Matsumura K, Ariga M, Konno N, Ogata M, Habu N.	J Appl Glycosci (1999)	10.5458/jag.7203102	2025
Metabolism	Impaired Fat Absorption from Intestinal Tract in High-Fat Diet Fed Male Mice Deficient in Proglucagon-Derived Peptides.	Nishida K, Ueno S, Seino Y, Hidaka S, Murao N, Asano Y, Fujisawa H, Shibata M, Takayanagi T, Ohbayashi K, Iwasaki Y, Iizuka K, Okuda S, Tanaka M, Fujii T, Tochio T, Yabe D, Yamada Y, Sugimura Y, Hirooka Y, Hayashi Y, Suzuki A.	Nutrients	10.3390/nu16142270	2024
	Sialylated O -Glycans from Hen Egg White Ovomucin are Decomposed by Mucin-degrading Gut Microbes.	Takada H, Katoh T, Katayama T.	J Appl Glycosci (1999)	10.5458/jag.jag.jag-2019_0020	2020
	Species- and Age/Generation-Dependent Adherence of Bifidobacterium bifidum to Human Intestinal Mucus In Vitro.	Harata G, Yoda K, Wang R, Miyazawa K, Sato M, He F, Endo A.	Microorganisms	10.3390/microorganisms9030542	2021
	Clostridium butyricum-altered lung microbiome is associated with enhanced anti-influenza effects via G-protein-coupled receptor120.	Hagihara M, Yamashita M, Ariyoshi T, Minemura A, Yoshida C, Higashi S, Oka K, Takahashi M, Ota A, Maenaka A, Iwasaki K, Hirai J, Shibata Y, Umemura T, Mori T, Kato H, Asai N, Mikamo H.	iScience	10.1016/j.isci.2025.113502	2025
	Beneficial Effects of Newly Isolated Akkermansia muciniphila Strains from the Human Gut on Obesity and Metabolic Dysregulation.	Yang M, Bose S, Lim S, Seo J, Shin J, Lee D, Chung WH, Song EJ, Nam YD, Kim H.	Microorganisms	10.3390/microorganisms8091413	2020
Metabolism	Bifidobacterium animalis subsp. lactis A6 Alleviates Obesity Associated with Promoting Mitochondrial Biogenesis and Function of Adipose Tissue in Mice.	Huo Y, Lu X, Wang X, Wang X, Chen L, Guo H, Zhang M, Li Y.	Molecules	10.3390/molecules25071490	2020
	Bifidobacterium animalis subsp. lactis A6 Enhances Fatty Acid beta-Oxidation of Adipose Tissue to Ameliorate the Development of Obesity in Mice.	Huo Y, Zhao G, Li J, Wang R, Ren F, Li Y, Wang X.	Nutrients	10.3390/nu14030598	2022
Phylogeny	Benchmark of 16S rRNA gene amplicon sequencing using Japanese gut microbiome data from the V1-V2 and V3-V4 primer sets.	Kameoka S, Motooka D, Watanabe S, Kubo R, Jung N, Midorikawa Y, Shinozaki NO, Sawai Y, Takeda AK, Nakamura S.	BMC Genomics	10.1186/s12864-021-07746-4	2021
	Cross-generational bacterial strain transfer to an infant after fecal microbiota transplantation to a pregnant patient: a case report.	Wei S, Jespersen ML, Baunwall SMD, Myers PN, Smith EM, Dahlerup JF, Rasmussen S, Nielsen HB, Licht TR, Bahl MI, Hvas CL.	Microbiome	10.1186/s40168-022-01394-w	2022
Genetics	Complete Genome Sequence of Akkermansia muciniphila JCM 30893, Isolated from Feces of a Healthy Japanese Male.	Ogata Y, Sakamoto M, Ohkuma M, Hattori M, Suda W	Microbiol Resour Announc	10.1128/MRA.01543-19	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Akkermansia muciniphila (JCM 30893)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_010509235

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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