Strain identifier

BacDive ID: 163901

Type strain: No

Species: Phascolarctobacterium faecium

Strain history: M. Sakamoto; RIKEN BRC-JCM, Japan; CBH30.

NCBI tax ID(s): 33025 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 163901

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-negative

description: Phascolarctobacterium faecium JCM 30894 is an anaerobe, Gram-negative bacterium that was isolated from Feces of a man in the forties.

NCBI tax id

  • NCBI tax id: 33025
  • Matching level: species

strain history

  • @ref: 67770
  • history: M. Sakamoto; RIKEN BRC-JCM, Japan; CBH30.

doi: 10.13145/bacdive163901.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Negativicutes
  • order: Acidaminococcales
  • family: Acidaminococcaceae
  • genus: Phascolarctobacterium
  • species: Phascolarctobacterium faecium
  • full scientific name: Phascolarctobacterium faecium Del Dot et al. 1994

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Negativicutes

order: Acidaminococcales

family: Acidaminococcaceae

genus: Phascolarctobacterium

species: Phascolarctobacterium faecium

full scientific name: Phascolarctobacterium faecium Del Dot et al. 1994

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 95.723

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: anaerobe
  • confidence: 99.998

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Feces of a man in the forties

taxonmaps

  • @ref: 69479
  • File name: preview.99_10486.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_220;96_5190;97_6264;98_7814;99_10486&stattab=map
  • Last taxonomy: Phascolarctobacterium faecium
  • 16S sequence: LC071791
  • Sequence Identity:
  • Total samples: 153693
  • soil counts: 1819
  • aquatic counts: 7831
  • animal counts: 143422
  • plant counts: 621

Sequence information

16S sequences

  • @ref: 67770
  • description: Phascolarctobacterium faecium gene for 16S ribosomal RNA, partial sequence, strain: JCM 30894
  • accession: LC071791
  • length: 1459
  • database: nuccore
  • NCBI tax ID: 33025

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Phascolarctobacterium faecium JCM 30894GCA_003945365completencbi33025
66792Phascolarctobacterium faecium strain JCM 3089433025.13completepatric33025

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno83.886no
flagellatedno94.614no
gram-positiveno95.723no
anaerobicyes99.998no
aerobicno97.996no
halophileno93.848no
spore-formingno78.676no
glucose-utilno53.741no
thermophileno98.003yes
glucose-fermentno66.358no

External links

@ref: 67770

culture collection no.: JCM 30894

literature

  • topic: Genetics
  • Pubmed-ID: 30687834
  • title: Complete Genome Sequence of Phascolarctobacterium faecium JCM 30894, a Succinate-Utilizing Bacterium Isolated from Human Feces.
  • authors: Ogata Y, Suda W, Ikeyama N, Hattori M, Ohkuma M, Sakamoto M
  • journal: Microbiol Resour Announc
  • DOI: 10.1128/MRA.01487-18
  • year: 2019
  • topic2: Phylogeny

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes