Streptomyces reticuliscabiei | Type strain | DSM 41804, CFBP 4531, ICMP 13716, NCPPB 4041, CIP 107143

Caption:

Medium 65 28°C

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

Culture medium growth

Medium recipe at MediaDive

Culture medium link

Culture medium composition

[Ref.: #36097]

Culture medium

MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum

[Ref.: #36097]

Culture medium growth

[Ref.: #36097]

Culture medium composition

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

Culture medium growth

Medium recipe at MediaDive

Culture medium link

Culture medium composition

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

Culture medium growth

Medium recipe at MediaDive

Culture medium link

Culture medium composition

Culture medium

CIP Medium 57

Culture medium growth

Medium recipe provided by DSMZ

Culture medium link

	Kind of temperature		Temperature
[Ref.: #10588]		growth	28 °C
[Ref.: #36097]		growth	30 °C
[Ref.: #122165]		growth	25-41 °C
[Ref.: #122165]	no	growth	10 °C
[Ref.: #122165]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

What are isolation sources categories?

Oxygen tolerance

obligate aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #122165]	NaCl		growth	0-2	%
[Ref.: #122165]	NaCl	no	growth	4	%
[Ref.: #122165]	NaCl	no	growth	6	%
[Ref.: #122165]	NaCl	no	growth	8	%
[Ref.: #122165]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #122165]	esculin ChEBI	+	hydrolysis
[Ref.: #122165]	hippurate ChEBI	-	hydrolysis
[Ref.: #122165]	nitrate ChEBI	-	reduction
[Ref.: #122165]	nitrate ChEBI	-	respiration
[Ref.: #122165]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #122165]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #122165]		acetoin ChEBI	-
[Ref.: #122165]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122165]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #122165]	amylase	+
[Ref.: #122165]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122165]	caseinase	+	3.4.21.50
[Ref.: #122165]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #122165]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122165]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #122165]	gelatinase	+
[Ref.: #122165]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122165]	lipase	-
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #122165]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122165]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122165]	oxidase	-
[Ref.: #122165]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #122165]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122165]	tryptophan deaminase	-
[Ref.: #122165]	tween esterase	+
[Ref.: #122165]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122165]	2028	not determinedn.d.	+	+	+	+	+	-	+	+	+	+	+	+	+	-	-	+	+	+	+	+	+	+	-	+	+	-	+	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	+	+	+	-	-	+	-	-	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+	+	-	-	-	-	-	+	-	-	+	+	+	-	+	+	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122165]	10099	-	+	+	+	+	+	-	-	-	-	+	+	+	+	-	-	+	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10588]	Sample type/isolated from	lesions of netted scab on potato tubers
[Ref.: #10588]	Country	France
[Ref.: #10588]	Country ISO 3 Code	FRA
[Ref.: #10588]	Continent	Europe

[Ref.: #122165]	Sample type/isolated from	Plant, Lesions of nettedscab on potato tubers
[Ref.: #122165]	Country	France
[Ref.: #122165]	Country ISO 3 Code	FRA
[Ref.: #122165]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Other	#Wound
#Host Body-Site	#Plant	#Rhizosphere

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10588]	Pathogenicity (plant)	yes
[Ref.: #10588]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122165]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #10588]	Streptomyces sp. 16S rRNA gene, isolate CFBP4531	AJ007428	1418	GenBank ENA	146821 tax ID
[Ref.: #20218]	Streptomyces reticuliscabiei strain CFBP 4531 clone ITS 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296981	280	GenBank ENA	146821 tax ID	*
[Ref.: #20218]	Streptomyces reticuliscabiei strain CFBP 4531 clone ITS4 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296982	282	GenBank ENA	146821 tax ID	*
[Ref.: #20218]	Streptomyces reticuliscabiei strain CFBP 4531 clone ITS7 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296983	281	GenBank ENA	146821 tax ID	*

GC-content

69.8 mol%

Availability in culture collections External links