Strain identifier

BacDive ID: 16373

Type strain: Yes

Species: Streptomyces reticuliscabiei

Strain history: CIP <- 2001, K. Bouchek, INRA, France

NCBI tax ID(s): 146821 (species)

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General

@ref: 10588

BacDive-ID: 16373

DSM-Number: 41804

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped, plant pathogen

description: Streptomyces reticuliscabiei DSM 41804 is an obligate aerobe, mesophilic, Gram-positive plant pathogen that was isolated from lesions of netted scab on potato tubers.

NCBI tax id

  • NCBI tax id: 146821
  • Matching level: species

strain history

@refhistory
10588<- NCPPB
360972001, K. Bouchek, INRA, France
122165CIP <- 2001, K. Bouchek, INRA, France

doi: 10.13145/bacdive16373.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces reticuliscabiei
  • full scientific name: Streptomyces reticuliscabiei Bouchek-Mechiche et al. 2000

@ref: 10588

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces reticuliscabiei

full scientific name: Streptomyces reticuliscabiei Bouchek-Mechiche et al. 2000

type strain: yes

Morphology

cell morphology

  • @ref: 122165
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 122165

multimedia

  • @ref: 10588
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_41804.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10588GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
36097MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulumyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g)
10588ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
10588STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
122165CIP Medium 57yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=57

culture temp

@refgrowthtypetemperaturerange
10588positivegrowth28mesophilic
36097positivegrowth30mesophilic
122165positivegrowth25-41
122165nogrowth10psychrophilic
122165nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 122165
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
122165NaClpositivegrowth0-2 %
122165NaClnogrowth4 %
122165NaClnogrowth6 %
122165NaClnogrowth8 %
122165NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1221654853esculin+hydrolysis
122165606565hippurate-hydrolysis
12216517632nitrate-reduction
12216516301nitrite-reduction
12216517632nitrate-respiration

metabolite production

  • @ref: 122165
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12216515688acetoin-
12216517234glucose-

enzymes

@refvalueactivityec
122165oxidase-
122165beta-galactosidase-3.2.1.23
122165alcohol dehydrogenase-1.1.1.1
122165gelatinase+
122165amylase+
122165DNase-
122165caseinase+3.4.21.50
122165catalase+1.11.1.6
122165tween esterase+
122165gamma-glutamyltransferase+2.3.2.2
122165lecithinase-
122165lipase-
122165lysine decarboxylase-4.1.1.18
122165ornithine decarboxylase-4.1.1.17
122165phenylalanine ammonia-lyase-4.3.1.24
122165protease-
122165tryptophan deaminase-
122165urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122165-+++++----++++--+-+-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
122165+++++-+++++++--+++++++-++-+----+++---------+----+++--+---+--+-++---------+-----++-----+--+++-++----

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
10588lesions of netted scab on potato tubersFranceFRAEurope
122165Plant, Lesions of nettedscab on potato tubersFranceFRAEurope

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Other#Wound
#Host Body-Site#Plant#Rhizosphere

Safety information

risk assessment

@refpathogenicity plantbiosafety levelbiosafety level comment
10588yes1Risk group (German classification)
1221651Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces reticuliscabiei strain CFBP 4531 clone ITS 16S-23S ribosomal RNA intergenic spacer, partial sequenceAY296981280ena146821
20218Streptomyces reticuliscabiei strain CFBP 4531 clone ITS4 16S-23S ribosomal RNA intergenic spacer, partial sequenceAY296982282ena146821
20218Streptomyces reticuliscabiei strain CFBP 4531 clone ITS7 16S-23S ribosomal RNA intergenic spacer, partial sequenceAY296983281ena146821
10588Streptomyces sp. 16S rRNA gene, isolate CFBP4531AJ0074281418ena146821

GC content

  • @ref: 10588
  • GC-content: 69.8

External links

@ref: 10588

culture collection no.: DSM 41804, CFBP 4531, ICMP 13716, NCPPB 4041, CIP 107143

straininfo link

  • @ref: 85427
  • straininfo: 87856

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny10826791DNA relatedness among strains of Streptomyces pathogenic to potato in France: description of three new species, S. europaeiscabiei sp. nov. and S. stelliscabiei sp. nov. associated with common scab, and S. reticuliscabiei sp. nov. associated with netted scab.Bouchek-Mechiche K, Gardan L, Normand P, Jouan BInt J Syst Evol Microbiol10.1099/00207713-50-1-912000Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Plant Diseases/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Solanum tuberosum/*microbiology, Streptomyces/*classification/genetics/isolation & purification/physiologyGenetics
Phylogeny27601150Streptomyces lacrimifluminis sp. nov., a novel actinobacterium that produces antibacterial compounds, isolated from soil.Zhang B, Tang S, Chen X, Zhang L, Zhang G, Zhang W, Liu G, Chen T, Li S, Dyson PInt J Syst Evol Microbiol10.1099/ijsem.0.0014562016Anti-Bacterial Agents/*biosynthesis, Antibiosis, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10588Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41804)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41804
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36097Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4546
68382Automatically annotated from API zym
85427Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID87856.1StrainInfo: A central database for resolving microbial strain identifiers
122165Curators of the CIPCollection of Institut Pasteur (CIP 107143)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107143