Streptomyces thermoalcalitolerans (DSM 41741, CIP 109044, IFO 16322)

Name: Streptomyces thermoalcalitolerans (DSM 41741, CIP 109044, IFO 16322)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16346

Type strain

Strain Designation TA56

Culture col. no. DSM 41741 CIP 109044 IFO 16322 JCM 10673 NBRC 16322 2 more

NCBI tax ID(s) 65605

Special Collections DSMZ JCM KCTC CIP

History DSMZ <- M. Goodfellow; TA56 JCM <-- DSM 41741 <-- M. Goodfellow TA56 <-- N. Sahin.

Links

Streptomyces thermoalcalitolerans TA56 is a bacterium that was isolated from garden soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 50093

DSM 41741,IFO 16322,JCM 10673,KCTC 9936,NBRC 16322,LMG 19858,NRRL B-24315,CIP 109044

@ref 20215

Last LPSN update 2026-05-29 08:28:45

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces thermoalcalitolerans

Full scientific name Streptomyces thermoalcalitolerans Kim et al. 1999

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125439		94.587
125439		99.47	positive

Multimedia

@ref:	10520
multimedia content:	DSM_41741.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_41741.jpg
caption:	Medium 65 45°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
10520	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10520	ISP MEDIUM 4 (DSMZ Medium 547)	Medium recipe at MediaDive	Name: ISP MEDIUM 4 (DSMZ Medium 547) Composition: Agar 19.98 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999002 g/l MgSO4 x 7 H2O 0.999002 g/l NaCl 0.999002 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
10520	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
10520	positive	growth	45
67770	positive	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.691

Observation

67770

Observationquinones: MK-9(H₈)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Garden

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
10520	garden soil	Yogyakarta	Indonesia	IDN	Asia
67770	Garden soil	Yogyakarta	Indonesia	IDN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10520	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3952515v1 assembly for Streptomyces thermoalcalitolerans JCM 10673	scaffold	GCA_039525155	65605	43.2

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Streptomyces thermoalcalitolerans gene for 16S rRNA, partial sequence, strain: NBRC 16322	AB249909	1485		65605
10520	Streptomyces thermoalkalitolerans DNA for 16S ribosomal RNA	AJ000284	1286		65605

GC content

@ref	GC-content (mol%)	Method
10520	73
67770	73	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3952515v1 assembly for Streptomyces thermoalcalitolerans JCM 10673
NCBI: GCA_039525155

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.69	no
125439	motility	BacteriaNetⓘ	no	94.59	no
125439	gram_stain	BacteriaNetⓘ	positive	99.47	no
125439	spore_formation	BacteriaNetⓘ	yes	84.91	no

Literature

References

#10520	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41741
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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