Name: Psychrobacter sp. JCM 18903
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 162330

Type strain:

Species: Psychrobacter sp.

Culture col. no.: JCM 18903

Strain history: T. Kudo B296.

NCBI tax ID(s): 1298610 (species)

Special Collections

Other strains from Psychrobacter sp.

Section

Psychrobacter sp. JCM 18903 is a mesophilic, Gram-negative bacterium that was isolated from Intestinal samples of the frozen finless porpoise Neophocaena phocaenoides.

Gram-negative
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Psychrobacter*
	Full Scientific Name (LPSN)	Psychrobacter Juni and Heym 1986

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.5

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %95.4
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Intestinal samples of the frozen finless porpoise Neophocaena phocaenoides
[Ref.: #67770]	Host species	Neophocaena phocaenoides
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Psychrobacter sp. JCM 18903	GCA_000586475	contig	GenBank ENA	1298610 tax ID
[Ref.: #66792]	Psychrobacter sp. JCM 18903 Psychrobacter sp. JCM18903	GCA_904846635	contig	GenBank ENA	1298610 tax ID	*
[Ref.: #66792]	Psychrobacter sp. JCM 18903	1298610.3	wgs	PATRIC	1298610 tax ID	*
[Ref.: #66792]	Psychrobacter sp. JCM 18903 strain Psychrobacter sp. JCM18903	1298610.4	wgs	PATRIC	1298610 tax ID	*
[Ref.: #66792]	Psychrobacter sp. JCM 18903	2576861790	draft	JGI IMG/M	1298610 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Psychrobacter sp. JCM 18903 strain Psychrobacter sp. JCM18903 PATRIC: 1298610.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Psychrobacter sp. JCM 18903 PATRIC: 1298610.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.152	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	95.4	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.943	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.263	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	72.002	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 18903

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Psychrobacter sp. in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Psychrobacter sp. JCM 18903 strain Psychrobacter sp. JCM18903

Psychrobacter sp. JCM 18903

Change proposal

Change proposal