Name: Psychrobacter sp. JCM 20360
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162893

Type strain:

Species: Psychrobacter sp.

Culture col. no.: JCM 20360, IAM 12030, IFO 15736, NBRC 15736, NCIMB 2071

Strain history: IAM 12030 <-- K. Inoue and K. Komagata 72-O-c ("Micrococcus cryophilus").

NCBI tax ID(s): 1113655 (species)

SI-ID 308689

NCIMB 2071, IAM12030, CCM 3314, IFO 15736, NBRC 15736, NCMB 2071, JCM 20360

Other strains from Psychrobacter sp.

P. sp. H7-1, DSM 5682, ATCC 25861, NCIMB ...
P. sp. H8-1, DSM 5684, ATCC 25862, NCIMB ...
P. sp. HII-4, DSM 5683, ATCC 25863, NCIMB ...
P. sp. DD2, DSM 15331
P. sp. DD43, DSM 15332
P. sp. DSM 15323, CMS 30
P. sp. 2 pS, DSM 16092, VKM B-2270
P. sp. Pi 2-1, DSM 15403, KMM 3638
P. sp. Pi 2-52, DSM 15405, KMM 3652
P. sp. Pi 2-51, DSM 15386, KMM 3642
P. sp. CCUG 3170
P. sp. CCUG 38841
P. sp. CCUG 39521
P. sp. CCUG 45950
P. sp. CCUG 46245
P. sp. CCUG 48341
P. sp. CCUG 52122
P. sp. CCUG 60220
P. sp. CCUG 60811
P. sp. Pi 2-33, DSM 15404, KMM 3641
P. sp. JCM 18900
P. sp. JCM 18901
P. sp. JCM 18902
P. sp. JCM 18903

Section

Psychrobacter sp. JCM 20360 is a psychrophilic bacterium that was isolated from Soil at Showa Station.

psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Psychrobacter*
	Full Scientific Name (LPSN)	Psychrobacter Juni and Heym 1986

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	10 °C

[Ref.: #67770]

Temperature range

psychrophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil at Showa Station
[Ref.: #67770]	Country	Antarctica
[Ref.: #67770]	Country ISO 3 Code	ATA
[Ref.: #67770]	Continent	Antarctica
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB680955 (>99% sequence identity) for Psychrobacter from Microbeatlas

Aquatic Samples	38
Soil Samples	8
Animal Samples	65
Plant Samples	4
Total Samples	115

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Psychrobacter sp. NBRC 15736 gene for 16S rRNA, partial sequence	AB680955	1464	ENA	1113655 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Psychrobacter sp. 72-O-c Psychrobacter sp. IAM12030-72-O-c	GCA_904846605	contig	GenBank	2774125 tax ID	*
[Ref.: #66792]	Psychrobacter sp. 72-O-c strain Psychrobacter sp. IAM12030-72-O-c	2774125.4	wgs	PATRIC	2774125 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Psychrobacter sp. 72-O-c strain Psychrobacter sp. IAM12030-72-O-c PATRIC: 2774125.4
[Ref.: #69480]	motile	no	85.195	no
[Ref.: #69480]	gram-positive	no	97.987	no
[Ref.: #69480]	anaerobic	no	98.904	no
[Ref.: #69480]	halophile	yes	86.386	no
[Ref.: #69480]	spore-forming	no	96.943	no
[Ref.: #69480]	glucose-util	no	52.578	no
[Ref.: #69480]	flagellated	no	89.334	no
[Ref.: #69480]	aerobic	yes	90.811	no
[Ref.: #69480]	thermophile	no	99.512	yes
[Ref.: #69480]	glucose-ferment	no	92.996	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 20360, IAM 12030, IFO 15736, NBRC 15736, NCIMB 2071

[Ref.: #113683]

SI-ID 308689

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#113683

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID308689.1 )

* These data were automatically processed and therefore are not curated

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Psychrobacter sp. 72-O-c strain Psychrobacter sp. IAM12030-72-O-c

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