Name: Psychrobacter sp. H8-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5921

Type strain:

Species: Psychrobacter sp.

Strain Designation: H8-1

Culture col. no.: DSM 5684, ATCC 25862, NCIMB 1812

Strain history: <- NCIMB <- K. Hayash, H8-1. Originally deposited as "Halococcus agglomeratus"

NCBI tax ID(s): 1608627 (species)

SI-ID 47982

DSM 5684, ATCC 25862, NCIMB 1812, BCRC 10363, CCRC 10363, IAM 12095

Other strains from Psychrobacter sp.

P. sp. H7-1, DSM 5682, ATCC 25861, NCIMB ...
P. sp. HII-4, DSM 5683, ATCC 25863, NCIMB ...
P. sp. DD2, DSM 15331
P. sp. DD43, DSM 15332
P. sp. DSM 15323, CMS 30
P. sp. 2 pS, DSM 16092, VKM B-2270
P. sp. Pi 2-1, DSM 15403, KMM 3638
P. sp. Pi 2-52, DSM 15405, KMM 3652
P. sp. Pi 2-51, DSM 15386, KMM 3642
P. sp. CCUG 3170
P. sp. CCUG 38841
P. sp. CCUG 39521
P. sp. CCUG 45950
P. sp. CCUG 46245
P. sp. CCUG 48341
P. sp. CCUG 52122
P. sp. CCUG 60220
P. sp. CCUG 60811
P. sp. Pi 2-33, DSM 15404, KMM 3641
P. sp. JCM 18900
P. sp. JCM 18901
P. sp. JCM 18902
P. sp. JCM 18903
P. sp. JCM 20360, IAM 12030, IFO 15736, ...

Section

Psychrobacter sp. H8-1 is a mesophilic bacterium that was isolated from pickled mackerel.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Psychrobacter*
	Full Scientific Name (LPSN)	Psychrobacter Juni and Heym 1986

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2281]

Culture medium

OXOID NUTRIENT BROTH (DSMZ Medium 948)

[Ref.: #2281]

Culture medium growth

[Ref.: #2281]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2281]

Culture medium composition

expand / minimize

[Ref.: #2281]

Culture medium

NUTRIENT AGAR (OXOID CM3) (DSMZ Medium 605)

[Ref.: #2281]

Culture medium growth

[Ref.: #2281]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2281]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2281]			growth	37 °C

[Ref.: #2281]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2281]

Name of produced compound

restriction endonuclease HagI

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2281]	Sample type/isolated from	pickled mackerel
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Food
#Host	#Fishes	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2281]	Psychrobacter sp. DSM 5684 partial 16S rRNA gene, strain DSM 5684	LN810552	1527	ENA	1608627 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Psychrobacter sp. H8-1	2774129.3	wgs	PATRIC	2774129 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Psychrobacter sp. H8-1 PATRIC: 2774129.3
[Ref.: #69480]	motile	no	89.426	no
[Ref.: #69480]	gram-positive	no	98.313	no
[Ref.: #69480]	anaerobic	no	98.164	no
[Ref.: #69480]	halophile	yes	80.006	no
[Ref.: #69480]	spore-forming	no	97.103	no
[Ref.: #69480]	glucose-util	no	66.958	no
[Ref.: #69480]	flagellated	no	93.851	no
[Ref.: #69480]	aerobic	yes	88.255	no
[Ref.: #69480]	thermophile	no	99.176	yes
[Ref.: #69480]	glucose-ferment	no	92.961	no

Availability in culture collections External links

[Ref.: #2281]

Culture collection no.

DSM 5684, ATCC 25862, NCIMB 1812

[Ref.: #75402]

SI-ID 47982

References

#2281

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5684

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75402

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47982.1 )

* These data were automatically processed and therefore are not curated

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