Name: Salinicola peritrichatus DY22
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162296

Type strain:

Species: Salinicola peritrichatus

Strain Designation: DY22

Culture col. no.: JCM 18795, CGMCC 1.12381, UCCCB104

Strain history: Huo Y.-Y. Laboratory of Marine Ecosystem and Biogeochemistry,State Oceanic Administration

NCBI tax ID(s): 1267424 (species)

Section

Salinicola peritrichatus DY22 is a mesophilic bacterium that was isolated from Deep-sea sediment of the east Pacific Ocean .

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Salinicola*
	Species	**Salinicola peritrichatus**
	Full Scientific Name (LPSN)	Salinicola peritrichatus Huo et al. 2013

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	35 °C
[Ref.: #67772]	optimum	35-37 °C
[Ref.: #67772]	minimum	4 °C
[Ref.: #67772]	maximum	42 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67772]	Temperature range	mesophilic
[Ref.: #67772]	Temperature range	psychrophilic
[Ref.: #67772]	Temperature range	thermophilic

		pH
[Ref.: #67772]	maximum	8.5
[Ref.: #67772]	minimum	4.5
[Ref.: #67772]	optimum	5.0-7.0

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Deep-sea sediment of the east Pacific Ocean (106.4818° W, 5.3016° S)
[Ref.: #67770]	Geographic location	-5.3016°/-106.4820°

[Ref.: #67772]	Sample type/isolated from	Deep-sea sediment collected from the east Pacific Ocean
[Ref.: #67772]	Sampling date	2008
[Ref.: #67772]	Geographic location	-5.3016°/-106.4820°
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #67772]

Biosafety level

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67772]	Salinicola peritrichatus strain DY22 16S ribosomal RNA gene, partial sequence	KC005304	1462	ENA	1267424 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67772]	Salinicola peritrichatus JCM 18795	GCA_003206715	scaffold	GenBank	1267424 tax ID
[Ref.: #66792]	Salinicola peritrichatus strain JCM 18795	1267424.3	wgs	PATRIC	1267424 tax ID	*
[Ref.: #66792]	Salinicola peritrichatus JCM 18795	2882447294	draft	JGI IMG/M	1267424 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salinicola peritrichatus strain JCM 18795 PATRIC: 1267424.3
[Ref.: #69480]	motile	yes	88.866	no
[Ref.: #69480]	gram-positive	no	97.95	no
[Ref.: #69480]	anaerobic	no	99.16	no
[Ref.: #69480]	aerobic	yes	83.884	no
[Ref.: #69480]	halophile	yes	85.909	no
[Ref.: #69480]	spore-forming	no	95.695	no
[Ref.: #69480]	glucose-util	yes	93.631	no
[Ref.: #69480]	flagellated	no	71.102	no
[Ref.: #69480]	thermophile	no	99.34	no
[Ref.: #69480]	glucose-ferment	yes	51.804	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 18795, CGMCC 1.12381, UCCCB104

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salinicola peritrichatus sp. nov., isolated from deep-sea sediment.	Huo YY, Meng FX, Xu L, Wang CS, Xu XW	Antonie Van Leeuwenhoek	10.1007/s10482-013-9925-1	2013	*
Phylogeny	Salinicola tamaricis sp. nov., a heavy-metal-tolerant, endophytic bacterium isolated from the halophyte Tamarix chinensis Lour.	Zhao GY, Zhao LY, Xia ZJ, Zhu JL, Liu D, Liu CY, Chen XL, Zhang YZ, Zhang XY, Dai MX	Int J Syst Evol Microbiol	10.1099/ijsem.0.001868	2017	*
Phylogeny	Salinicola rhizosphaerae sp. nov., isolated from the rhizosphere of the mangrove Avicennia marina L.	Raju K, Sekar J, Vaiyapuri Ramalingam P	Int J Syst Evol Microbiol	10.1099/ijsem.0.000837	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67772 The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Salinicola peritrichatus strain JCM 18795

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