Name: Salinicola peritrichatus DY22
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 162296

Type strain:

Species: Salinicola peritrichatus

Strain Designation: DY22

Culture col. no.: JCM 18795, CGMCC 1.12381, UCCCB104

Strain history: Huo Y.-Y. Laboratory of Marine Ecosystem and Biogeochemistry,State Oceanic Administration

NCBI tax ID(s): 1267424 (species)

Special Collections

JCM
UCCCB

Section

When using BacDive for research please cite our paper

Salinicola peritrichatus DY22 is a mesophilic bacterium that was isolated from Deep-sea sediment of the east Pacific Ocean .

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Salinicola*
	Species	**Salinicola peritrichatus**
	Full Scientific Name (LPSN)	Salinicola peritrichatus Huo et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	negative Confidence in %100
[Ref.: #125439]	Gram stain	negative Confidence in %99.5

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	35 °C
[Ref.: #67772]	optimum	35-37 °C
[Ref.: #67772]	minimum	4 °C
[Ref.: #67772]	maximum	42 °C

		pH
[Ref.: #67772]	maximum	8.5
[Ref.: #67772]	minimum	4.5
[Ref.: #67772]	optimum	5.0-7.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

aerobe Confidence in %90.5

[Ref.: #125439]

Ability of spore formation

no Confidence in %99.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Deep-sea sediment of the east Pacific Ocean (106.4818° W, 5.3016° S)
[Ref.: #67770]	Geographic location	-5.3016°/-106.4820°

[Ref.: #67772]	Sample type/isolated from	Deep-sea sediment collected from the east Pacific Ocean
[Ref.: #67772]	Sampling date	2008
[Ref.: #67772]	Geographic location	-5.3016°/-106.4820°
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #67772]

Biosafety level

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67772]	Salinicola peritrichatus strain DY22 16S ribosomal RNA gene, partial sequence	KC005304	1462	GenBank ENA	1267424 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67772]	Salinicola peritrichatus JCM 18795	GCA_003206715	scaffold	GenBank ENA	1267424 tax ID
[Ref.: #66792]	Salinicola peritrichatus strain JCM 18795	1267424.3	wgs	PATRIC	1267424 tax ID	*
[Ref.: #66792]	Salinicola peritrichatus JCM 18795	2882447294	draft	JGI IMG/M	1267424 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Salinicola peritrichatus strain JCM 18795 PATRIC: 1267424.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	100	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	96.699	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	88.885	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	84.468	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	97.778	no
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	75.09	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Salinicola peritrichatus JCM 18795 NCBI: GCA_003206715
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	99.2
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	83.8
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.5
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	aerobe	90.5

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 18795, CGMCC 1.12381, UCCCB104

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salinicola peritrichatus sp. nov., isolated from deep-sea sediment.	Huo YY, Meng FX, Xu L, Wang CS, Xu XW	Antonie Van Leeuwenhoek	10.1007/s10482-013-9925-1	2013	*
Phylogeny	Salinicola tamaricis sp. nov., a heavy-metal-tolerant, endophytic bacterium isolated from the halophyte Tamarix chinensis Lour.	Zhao GY, Zhao LY, Xia ZJ, Zhu JL, Liu D, Liu CY, Chen XL, Zhang YZ, Zhang XY, Dai MX	Int J Syst Evol Microbiol	10.1099/ijsem.0.001868	2017	*
Phylogeny	Salinicola rhizosphaerae sp. nov., isolated from the rhizosphere of the mangrove Avicennia marina L.	Raju K, Sekar J, Vaiyapuri Ramalingam P	Int J Syst Evol Microbiol	10.1099/ijsem.0.000837	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67772 The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Salinicola peritrichatus in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Salinicola peritrichatus strain JCM 18795

Salinicola peritrichatus JCM 18795

Change proposal

Change proposal