Cite this strain

"Nitrincola nitratireducens" (MTCC 11628, JCM 18788)

BacDive ID 162295

Type strain

Culture col. no. MTCC 11628 JCM 18788

NCBI tax ID(s) 1229521

Special Collections JCM

History JCM <-- P. Anil Kumar AK23.

Links

"Nitrincola nitratireducens" JCM 18788 is a bacterium that was isolated from Sediment samples from Lonar Lake.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 394008

JCM 18788

@ref 20215

Last LPSN update 2026-05-29 08:44:53

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Oceanospirillaceae

Genus Nitrincola

Species "Nitrincola nitratireducens"

Full scientific name Nitrincola nitratireducens Singh et al. 2015

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	93.377
125438	negative	99.833

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.813

Spore formation

@ref	Spore formation	Confidence
125438		91.38
125439		99.702

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Sediment samples from Lonar Lake	Buldhana district of Maharashtra	India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence HE983365 (>99% sequence identity) for Nitrincola from Microbeatlas

Aquatic Samples	54
Soil Samples	10
Animal Samples	25
Plant Samples	1
Total Samples	90

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	NitAk23 assembly for Nitrincola nitratireducens AK23	contig	GCA_000585235	1229521.9	2563367223	1229521	57.62

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Nitrincola nitratireducens partial 16S rRNA gene, type strain AK23T	HE983365	1458		1229521

GC content

67770

GC-content (mol%)46.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: NitAk23 assembly for Nitrincola nitratireducens AK23
NCBI: GCA_000585235

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.81	no
125439	gram_stain	BacteriaNetⓘ	negative	93.38	no
125439	spore_formation	BacteriaNetⓘ	no	99.70	no
125439	motility	BacteriaNetⓘ	yes	60.19	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nitrincola nitratireducens AK23
NCBI: GCA_000585235.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.83	no
125438	anaerobic	anaerobicⓘ	no	95.13	no
125438	aerobic	aerobicⓘ	yes	74.45	no
125438	spore-forming	spore-formingⓘ	no	91.38	no
125438	thermophilic	thermophileⓘ	no	95.99	no
125438	flagellated	motile2+ⓘ	yes	87.74	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nitrincola nitratireducens sp. nov. isolated from a haloalkaline crater lake.	Singh A, Vaidya B, Tanuku NR, Pinnaka AK	Syst Appl Microbiol	10.1016/j.syapm.2015.09.002	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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"Nitrincola nitratireducens" (MTCC 11628, JCM 18788)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000585235

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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