Name: Nitrincola nitratireducens JCM 18788
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162295

Type strain:

Species: Nitrincola nitratireducens

Culture col. no.: JCM 18788, MTCC 11628

Strain history: P. Anil Kumar AK23.

NCBI tax ID(s): 1229521 (species)

Section

Nitrincola nitratireducens JCM 18788 is a mesophilic bacterium that was isolated from Sediment samples from Lonar Lake.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Oceanospirillaceae*
	Genus	*Nitrincola*
	Species	"Nitrincola nitratireducens"
	Full Scientific Name (LPSN)	Nitrincola nitratireducens Singh et al. 2015

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Sediment samples from Lonar Lake
[Ref.: #67770]	Geographic location (country and/or sea, region)	Buldhana district of Maharashtra
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence HE983365 (>99% sequence identity) for Nitrincola from Microbeatlas

Aquatic Samples	54
Soil Samples	10
Animal Samples	25
Plant Samples	1
Total Samples	90

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nitrincola nitratireducens partial 16S rRNA gene, type strain AK23T	HE983365	1458	ENA	1229521 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nitrincola nitratireducens AK23	GCA_000585235	contig	GenBank	1229521 tax ID

[Ref.: #67770]

GC-content

46.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nitrincola nitratireducens AK23 NCBI: GCA_000585235.1
[Ref.: #69480]	motile	yes	87.35	no
[Ref.: #69480]	flagellated	yes	93.24	no
[Ref.: #69480]	gram-positive	no	98.764	no
[Ref.: #69480]	anaerobic	no	97.884	no
[Ref.: #69480]	halophile	yes	68.271	no
[Ref.: #69480]	spore-forming	no	93.981	no
[Ref.: #69480]	glucose-util	yes	85.71	no
[Ref.: #69480]	aerobic	yes	85.842	no
[Ref.: #69480]	glucose-ferment	no	77.719	no
[Ref.: #69480]	thermophile	no	98.92	yes

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 18788, MTCC 11628

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nitrincola nitratireducens sp. nov. isolated from a haloalkaline crater lake.	Singh A, Vaidya B, Tanuku NR, Pinnaka AK	Syst Appl Microbiol	10.1016/j.syapm.2015.09.002	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Nitrincola nitratireducens AK23

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