Strain identifier

BacDive ID: 162296

Type strain: Yes

Species: Salinicola peritrichatus

Strain Designation: DY22

Strain history: Huo Y.-Y. Laboratory of Marine Ecosystem and Biogeochemistry,State Oceanic Administration

NCBI tax ID(s): 1267424 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 162296

keywords: genome sequence, 16S sequence, Bacteria, Gram-negative

description: Salinicola peritrichatus DY22 is a Gram-negative bacterium that was isolated from Deep-sea sediment of the east Pacific Ocean .

NCBI tax id

  • NCBI tax id: 1267424
  • Matching level: species

strain history

@refhistory
67770X.-W. Xu DY22.
67772Huo Y.-Y. Laboratory of Marine Ecosystem and Biogeochemistry,State Oceanic Administration

doi: 10.13145/bacdive162296.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Halomonadaceae
  • genus: Salinicola
  • species: Salinicola peritrichatus
  • full scientific name: Salinicola peritrichatus Huo et al. 2013

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Halomonadaceae

genus: Salinicola

species: Salinicola peritrichatus

full scientific name: Salinicola peritrichatus Huo et al. 2013

strain designation: DY22

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 97.95

Culture and growth conditions

culture temp

@refgrowthtypetemperature
67770positivegrowth35
67772positiveoptimum35-37
67772positiveminimum4
67772positivemaximum42

culture pH

@refabilitytypepHPH range
67772positiveoptimum5.0-7.0
67772positivemaximum8.5alkaliphile
67772positiveminimum4.5

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 95.695

Isolation, sampling and environmental information

isolation

@refsample typelatitudelongitudesampling date
67770Deep-sea sediment of the east Pacific Ocean (106.4818° W, 5.3016° S)-5.3016-106.482
67772Deep-sea sediment collected from the east Pacific Ocean-5.3016-106.4822008

Safety information

risk assessment

  • @ref: 67772
  • biosafety level: 1

Sequence information

16S sequences

  • @ref: 67772
  • description: Salinicola peritrichatus strain DY22 16S ribosomal RNA gene, partial sequence
  • accession: KC005304
  • length: 1462
  • database: nuccore
  • NCBI tax ID: 1267424

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salinicola peritrichatus strain JCM 187951267424.3wgspatric1267424
66792Salinicola peritrichatus JCM 187952882447294draftimg1267424
67772Salinicola peritrichatus JCM 18795GCA_003206715scaffoldncbi1267424

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes88.866no
gram-positiveno97.95no
anaerobicno99.16no
aerobicyes83.884no
halophileyes85.909no
spore-formingno95.695no
glucose-utilyes93.631no
flagellatedno71.102no
thermophileno99.34no
glucose-fermentyes51.804no

External links

@ref: 67770

culture collection no.: JCM 18795, CGMCC 1.12381, UCCCB104

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23609050Salinicola peritrichatus sp. nov., isolated from deep-sea sediment.Huo YY, Meng FX, Xu L, Wang CS, Xu XWAntonie Van Leeuwenhoek10.1007/s10482-013-9925-12013Anti-Bacterial Agents/pharmacology, Base Composition, Base Sequence, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Halomonadaceae/classification/drug effects/genetics/growth & development/*isolation & purification/metabolism/ultrastructure, Hydrogen-Ion Concentration, Lipids/analysis, Microbial Sensitivity Tests, Molecular Sequence Data, Pacific Ocean, Phenotype, Phylogeny, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Alignment, Sequence Homology, Nucleic Acid, Species Specificity, Temperature, *Water MicrobiologyGenetics
Phylogeny26652293Salinicola rhizosphaerae sp. nov., isolated from the rhizosphere of the mangrove Avicennia marina L.Raju K, Sekar J, Vaiyapuri Ramalingam PInt J Syst Evol Microbiol10.1099/ijsem.0.0008372015
Phylogeny28604335Salinicola tamaricis sp. nov., a heavy-metal-tolerant, endophytic bacterium isolated from the halophyte Tamarix chinensis Lour.Zhao GY, Zhao LY, Xia ZJ, Zhu JL, Liu D, Liu CY, Chen XL, Zhang YZ, Zhang XY, Dai MXInt J Syst Evol Microbiol10.1099/ijsem.0.0018682017Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Halomonadaceae/*classification/genetics/isolation & purification, Metals, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salt-Tolerant Plants/*microbiology, Sequence Analysis, DNA, Tamaricaceae/*microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67772Curators of the UCCCBhttps://ucccb.uc.pt/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes