Name: Streptomyces variegatus DSM 41479
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16210

Type strain:

Species: Streptomyces variegatus

Culture col. no.: DSM 41479, ATCC 43684, DSM 41503, DSM 41688, INMI 702, NRRL B-16367, VKM Ac-141, JCM 9089, CGMCC 4.1942, NBRC 100764

Strain history: VKM Ac-141 <-- INMI 702.

NCBI tax ID(s): 284031 (species)

SI-ID 46063

ATCC 43684, VKM Ac-141, DSM 41479, DSM 41503, DSM 41688, NRRL B-16367, JCM 9089, LMG 19905, NBRC 100764, CGMCC 4.1942

Special Collections

Other strains from Streptomyces variegatus

Section

Streptomyces variegatus DSM 41479 is a spore-forming bacterium that builds an aerial mycelium and was isolated from soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces variegatus**
	Full Scientific Name (LPSN)	Streptomyces variegatus Sveshnikova and Timuk 1986

Synonym

Streptomyces flavovariabilis

Information on morphological and physiological properties Morphology

[Ref.: #18697]	Colony color	Bottle green (6007)
[Ref.: #18697]	Incubation period	10-14 days
[Ref.: #18697]	Cultivation medium used	ISP 2

[Ref.: #18697]	Colony color	Green
[Ref.: #18697]	Incubation period	10-14 days
[Ref.: #18697]	Cultivation medium used	ISP 3

[Ref.: #18697]	Colony color	Colorless
[Ref.: #18697]	Incubation period	10-14 days
[Ref.: #18697]	Cultivation medium used	ISP 4

[Ref.: #18697]	Colony color	Colorless
[Ref.: #18697]	Incubation period	10-14 days
[Ref.: #18697]	Cultivation medium used	ISP 5

[Ref.: #18697]	Colony color	Brown
[Ref.: #18697]	Incubation period	10-14 days
[Ref.: #18697]	Cultivation medium used	ISP 6

[Ref.: #18697]	Colony color	Colorless
[Ref.: #18697]	Incubation period	10-14 days
[Ref.: #18697]	Cultivation medium used	ISP 7

[Ref.: #18697]	Multicellular complex forming ability	yes
[Ref.: #18697]	Multicellular complex name	Aerial Mycelium
[Ref.: #18697]	Multicellular complex color	White
[Ref.: #18697]	Medium Name (multicellularity)	ISP 2

[Ref.: #18697]	Multicellular complex forming ability	yes
[Ref.: #18697]	Multicellular complex name	Aerial Mycelium
[Ref.: #18697]	Multicellular complex color	White
[Ref.: #18697]	Medium Name (multicellularity)	ISP 3

[Ref.: #18697]	Multicellular complex forming ability	yes
[Ref.: #18697]	Multicellular complex name	Aerial Mycelium
[Ref.: #18697]	Multicellular complex color	Sparse, white
[Ref.: #18697]	Medium Name (multicellularity)	ISP 4

[Ref.: #18697]	Multicellular complex forming ability	yes
[Ref.: #18697]	Multicellular complex name	Aerial Mycelium
[Ref.: #18697]	Multicellular complex color	White
[Ref.: #18697]	Medium Name (multicellularity)	ISP 5

[Ref.: #18697]	Multicellular complex forming ability	no
[Ref.: #18697]	Medium Name (multicellularity)	ISP 6

[Ref.: #18697]	Multicellular complex forming ability	no
[Ref.: #18697]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10343]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #10343]

Culture medium growth

[Ref.: #10343]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10343]

Culture medium composition

expand / minimize

[Ref.: #18697]

Culture medium

ISP 2

[Ref.: #18697]

Culture medium growth

[Ref.: #18697]

Culture medium composition

expand / minimize

[Ref.: #18697]

Culture medium

ISP 3

[Ref.: #18697]

Culture medium growth

[Ref.: #18697]

Culture medium composition

expand / minimize

[Ref.: #18697]

Culture medium

ISP 4

[Ref.: #18697]

Culture medium growth

[Ref.: #18697]

Culture medium composition

expand / minimize

[Ref.: #18697]

Culture medium

ISP 5

[Ref.: #18697]

Culture medium growth

[Ref.: #18697]

Culture medium composition

expand / minimize

[Ref.: #18697]

Culture medium

ISP 6

[Ref.: #18697]

Culture medium growth

[Ref.: #18697]

Culture medium composition

expand / minimize

[Ref.: #18697]

Culture medium

ISP 7

[Ref.: #18697]

Culture medium growth

[Ref.: #18697]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #10343]	growth	28 °C
[Ref.: #18697]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %90.254

[Ref.: #69480]	Ability of spore formation	yes Confidence in %91.913
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18697]		NaCl		maximum	7.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18697]	205	+	+	+	+	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10343]	Sample type/isolated from	soil
[Ref.: #10343]	Geographic location (country and/or sea, region)	Sibiria, Taiga
[Ref.: #10343]	Country	Russia
[Ref.: #10343]	Country ISO 3 Code	RUS
[Ref.: #10343]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18697]	Biosafety level	1	German classification
[Ref.: #10343]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces flavovariabilis 16S rRNA gene, type strain LMG 19905	AJ781334	1478	GenBank ENA	284031 tax ID	*
[Ref.: #20218]	Streptomyces flavovariabilis gene for 16S rRNA, partial sequence, strain: NBRC 100764	AB249931	1481	GenBank ENA	284031 tax ID	*
[Ref.: #20218]	Streptomyces flavovariabilis strain NRRL B-16367 16S ribosomal RNA gene, partial sequence	EF178691	1496	GenBank ENA	284031 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces flavovariabilis NRRL B-16367	GCA_000725785	scaffold	GenBank ENA	284031 tax ID

[Ref.: #67770]

GC-content

71.2 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces flavovariabilis NRRL B-16367 NCBI: GCA_000725785.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces flavovariabilis NRRL B-16367 NCBI: GCA_000725785.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.352	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.04	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	90.254	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	91.913	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87.5	no

Availability in culture collections External links

[Ref.: #10343]

Culture collection no.

DSM 41479, ATCC 43684, DSM 41503, DSM 41688, INMI 702, NRRL B-16367, VKM Ac-141, JCM 9089, CGMCC 4.1942, NBRC 100764

[Ref.: #85271]

SI-ID 46063

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces luozhongensis sp. nov., a novel actinomycete with antifungal activity and antibacterial activity.	Zhang R, Han X, Xia Z, Luo X, Wan C, Zhang L	Antonie Van Leeuwenhoek	10.1007/s10482-016-0790-6	2016	*
Phylogeny	Streptomyces cahuitamycinicus sp. nov., isolated from desert soil and reclassification of Streptomyces galilaeus as a later heterotypic synonym of Streptomyces bobili.	Saygin H, Ay H, Guven K, Cetin D, Sahin N	Int J Syst Evol Microbiol	10.1099/ijsem.0.004103	2020	*
Phylogeny	Streptomyces qaidamensis sp. nov., isolated from sand in the Qaidam Basin, China.	Zhang B, Tang S, Chen X, Zhang G, Zhang W, Chen T, Liu G, Li S, Dos Santos LT, Castro HC, Facey P, Hitchings M, Dyson P	J Antibiot (Tokyo)	10.1038/s41429-018-0080-9	2018	*

References

#10343

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41479

#18697

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85271

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID46063.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces flavovariabilis in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Streptomyces flavovariabilis NRRL B-16367

Streptomyces flavovariabilis NRRL B-16367

Change proposal

Change proposal