Streptomyces lavenduligriseus (DSM 40487, AS 4.1851, ATCC 13306)

Name: Streptomyces lavenduligriseus (DSM 40487, AS 4.1851, ATCC 13306)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16159

Type strain

Strain Designation BA-6903 = FD 2212

Culture col. no. DSM 40487 AS 4.1851 ATCC 13306 CBS 706.72 IFO 13405 12 more

NCBI tax ID(s) 67315

Special Collections DSMZ JCM

Links

Streptomyces lavenduligriseus BA-6903 = FD 2212 is a mesophilic prokaryote that produces antibiotic compounds and was isolated from Soil.

antibiotic compound production mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 389367

ATCC 13306,ATCC 29661,DSM 40487,IFO 13405,NRRL B-3173,JCM 4545,VKM Ac-1159,JCM 4779,NBRC 13405,AS 4.1851,BCRC 15166,CCRC 15166,CGMCC 4.1913,CBS 706.72

@ref 20215

Last LPSN update 2025-12-16 09:50:47

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces lavenduligriseus

Full scientific name Streptomyces lavenduligriseus (Locci et al. 1969) Witt and Stackebrandt 1991

Synonyms (1)

Streptoverticillium lavenduligriseum

BacDive ID	Other strains from **Streptomyces lavenduligriseus** (2)	Type strain
159158	S. lavenduligriseus 15784-1, Schering 353, DSM 40868, ATCC 11891
160294	S. lavenduligriseus 8197-20, DSM 41570, ATCC 11924

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.4

Multimedia

@ref:	9592
multimedia content:	DSM_40487.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_40487.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9592	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9592	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)		Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 20.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l NaCl 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9592	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.6

Spore formation

@ref	Spore formation	Confidence
125438		92.471

Compound production

@ref	Compound
9592	narangomycin
67770	Narangomycin

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Soil	Malaya	Malaysia	MYS	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB184382 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	1
Soil Samples	63
Animal Samples	5
Plant Samples	3
Total Samples	72

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9592	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM71862v1 assembly for Streptomyces lavenduligriseus NRRL ISP-5487	contig	GCA_000718625	67315.3	2765236005	67315	35.35

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces lavenduligriseus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4545	D44224	120	67315
20218	Streptomyces lavenduligriseus gene for 16S rRNA, partial sequence, strain: NBRC 13405	AB184382	1448	67315
20218	Streptomyces lavenduligriseus strain NRRL B-3173T 16S ribosomal RNA gene, partial sequence	DQ442515	1495	67315

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces lavenduligriseus NRRL ISP-5487
NCBI: GCA_000718625

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	84.10	no
125439	motility	BacteriaNetⓘ	no	86.00	no
125439	gram_stain	BacteriaNetⓘ	positive	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces lavenduligriseus NRRL ISP-5487
NCBI: GCA_000718625.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.73	no
125438	anaerobic	anaerobicⓘ	no	96.89	no
125438	aerobic	aerobicⓘ	yes	89.55	no
125438	spore-forming	spore-formingⓘ	yes	92.47	no
125438	thermophilic	thermophileⓘ	no	96.00	yes
125438	flagellated	motile2+ⓘ	no	87.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	The potential biofortification role of Actinopolyspora sp. JTT-01 in enhancing the yield and tissue chemical composition of caraway plants.	Mahmoud AM, Sheteiwy MS, El-Keblawy A, Ulhassan Z, Khalaf MH, Mohamed HS, Okla MK, AlGarawi AM, El-Sawah AM, Ahmed ES, Reyad AM.	BMC Plant Biol	10.1186/s12870-025-06137-1	2025
	Synergistic Binding of the Halide and Cationic Prime Substrate of l-Lysine 4-Chlorinase, BesD, in Both Ferrous and Ferryl States.	Slater JW, Lin CY, Neugebauer ME, McBride MJ, Sil D, Nair MA, Katch BJ, Boal AK, Chang MCY, Silakov A, Krebs C, Bollinger JM.	Biochemistry	10.1021/acs.biochem.3c00248	2023
Metabolism	Negative Correlation between Lipid Content and Antibiotic Activity in Streptomyces: General Rule and Exceptions.	David M, Lejeune C, Abreu S, Thibessard A, Leblond P, Chaminade P, Virolle MJ.	Antibiotics (Basel)	10.3390/antibiotics9060280	2020
	Unexpected Methyllanthionine Stereochemistry in the Morphogenetic Lanthipeptide SapT.	Sarksian R, Hegemann JD, Simon MA, Acedo JZ, van der Donk WA.	J Am Chem Soc	10.1021/jacs.2c00517	2022
Metabolism	Identification of a butenolide signaling system that regulates nikkomycin biosynthesis in Streptomyces.	Wang W, Zhang J, Liu X, Li D, Li Y, Tian Y, Tan H.	J Biol Chem	10.1074/jbc.ra118.005667	2018
	Microbial synthesis of three metabolites of a tachykinin receptor antagonist, TAK-637.	Tarui N, Ikeura Y, Natsugari H, Nakahama K	J Biosci Bioeng	10.1263/jbb.92.285	2001
Phylogeny	Streptomyces lacticiproducens sp. nov., a lactic acid-producing streptomycete isolated from the rhizosphere of tomato plants.	Zhu HH, Yao Q, Yang SZ, Li ZK, Guo J	Int J Syst Evol Microbiol	10.1099/ijs.0.019125-0	2010
Phylogeny	Streptomyces roietensis sp. nov., an endophytic actinobacterium isolated from the surface-sterilized stem of jasmine rice, Oryza sativa KDML 105.	Kaewkla O, Franco CMM	Int J Syst Evol Microbiol	10.1099/ijsem.0.002402	2017

References

#9592	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40487
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces lavenduligriseus (DSM 40487, AS 4.1851, ATCC 13306)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000718625

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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