Streptomyces lilacinus (DSM 40254, ATCC 23930, CBS 914.68)

Name: Streptomyces lilacinus (DSM 40254, ATCC 23930, CBS 914.68)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16160

Type strain

Strain Designation 2305

Culture col. no. DSM 40254 ATCC 23930 CBS 914.68 ETH 24214 IFO 12884 17 more

NCBI tax ID(s) 68228

Special Collections DSMZ JCM KCTC CIP

History DSMZ <- E.B. Shirling, ISP <- IFO JCM <-- KCC S-0188 <-- M. Hamada <-- Y. Okami (NIHJ 71) <-- K. Nakazawa 2305. CIP <- 2003, JCM <- 1983, KCC <- M. Hamada <- Y. Okami (NIHJ 71) <- K. Nakazawa: strain 2305

Links

Streptomyces lilacinus 2305 is an obligate aerobe, Gram-positive, filament-shaped bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production Gram-positive filament-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 38291

ATCC 23930,IFO 3944,IFO 12884,JCM 4188,JCM 4648,DSM 40254,CCRC 12421,NRRL B-1968,DSM 40354,CBS 914.68,CECT 3264,KCTC 9875,NBRC 12884,NBRC 3944,LMG 20059,BCRC 12421,CIP 108148,BCRC 15107,CCRC 15107,VKM Ac-962

@ref 20215

Last LPSN update 2026-05-29 08:28:42

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces lilacinus

Full scientific name Streptomyces lilacinus (Nakazawa et al. 1956) Witt and Stackebrandt 1991

Synonyms (6)

Streptomyces kashimirensis
Streptoverticillium kashmirensis
"Streptomyces lilacinus"
Streptoverticillium kashmirense
Streptomyces kashmirensis
Streptoverticillium lilacinum

BacDive ID	Other strains from **Streptomyces lilacinus** (2)	Type strain
16161	S. lilacinus RLL 37, RR 37 A/9, DSM 40336, ATCC 27439, ...
127811	S. lilacinus ST005121(HKI), China4.216, IMET 40334

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
120598	positive	filament-shaped

Colony morphology

120598

Hemolysis ability1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
9408	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
33899	MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum		Distilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g)
120598	CIP Medium 57	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
9408	positive	growth	28
33899	positive	growth	30
67770	positive	growth	28
120598	positive	growth	25-41
120598	negative	growth	10
120598	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
120598	obligate aerobe
125438	aerobe	91.745

Spore formation

@ref	Spore formation	Confidence
125438		90.662

Compound production

9408

Compoundcladomycin

Halophily

@ref	Salt	Growth	Tested relation	Concentration
120598	NaCl	positive	growth	0-2 %
120598	NaCl		growth	4 %
120598	NaCl		growth	6 %
120598	NaCl		growth	8 %
120598	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
120598	16947 ChEBI	citrate	-	carbon source
120598	4853 ChEBI	esculin	+	hydrolysis
120598	606565 ChEBI	hippurate	-	hydrolysis
120598	17632 ChEBI	nitrate	-	reduction
120598	17632 ChEBI	nitrate	-	respiration
120598	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
67770		cladomycin
120598	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
120598	15688 ChEBI	acetoin	-
120598	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
120598	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
120598	amylase	+
68382	beta-galactosidase	-	3.2.1.23	from API zym
120598	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
120598	caseinase	+	3.4.21.50
120598	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
120598	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
120598	gamma-glutamyltransferase	-	2.3.2.2
120598	gelatinase	+/-
120598	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
120598	lipase	+
68382	lipase (C 14)	-		from API zym
120598	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120598	ornithine decarboxylase	-	4.1.1.17
120598	oxidase	-
120598	phenylalanine ammonia-lyase	-	4.3.1.24
120598	protease	+
68382	trypsin	-	3.4.21.4	from API zym
120598	tryptophan deaminase	-
120598	tween esterase	+
120598	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120598	-	+	+	+	-	+	+	+	-	-	+	+	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
120598	not determinedn.d.	+	-	-	+	+	-	-	-	-	+	+	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	+	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	+	+	-	-	-	+	-	+	-	+	+	+	+	-	+	+	-	+	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
9408	soil
67770	Soil	Ichinoseki, Fukushima Pref.	Japan	JPN	Asia
120598	Environment, Soil	Ichinoseki	Japan	JPN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9408	1	Risk group (German classification) According to TRBA 466
120598	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM71568v1 assembly for Streptomyces lilacinus NRRL B-1968	scaffold	GCA_000715685	68228.3	2775507103	68228	0

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces lilacinus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4188	D44027	121	68228
20218	Streptomyces lilacinus 16S rRNA gene, type strain LMG 20059	AJ781346	1476	68228
20218	Streptomyces lilacinus gene for 16S rRNA, partial sequence, strain: NBRC 12884	AB249906	1475	68228
20218	Streptomyces lilacinus gene for 16S rRNA, partial sequence, strain: NBRC 3944	AB184819	1475	68228

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces lilacinus NRRL B-1968
NCBI: GCA_000715685.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.13	no
125438	anaerobic	anaerobicⓘ	no	98.22	no
125438	aerobic	aerobicⓘ	yes	91.75	yes
125438	spore-forming	spore-formingⓘ	yes	90.66	no
125438	thermophilic	thermophileⓘ	no	94.44	no
125438	flagellated	motile2+ⓘ	no	89.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Recent Advances in the Chemistry of Bioactive Compounds from Plants and Soil Microbes: a Review	Haruna A, Yahaya S.	Chemistry Africa		2021
Phylogeny	Taxonomy and Broad-Spectrum Antifungal Activity of Streptomyces sp. SCA3-4 Isolated From Rhizosphere Soil of Opuntia stricta.	Qi D, Zou L, Zhou D, Chen Y, Gao Z, Feng R, Zhang M, Li K, Xie J, Wang W	Front Microbiol	10.3389/fmicb.2019.01390	2019
Genetics	Strain-specific proteogenomics accelerates the discovery of natural products via their biosynthetic pathways.	Albright JC, Goering AW, Doroghazi JR, Metcalf WW, Kelleher NL	J Ind Microbiol Biotechnol	10.1007/s10295-013-1373-4	2013
Phylogeny	Streptomyces palmae sp. nov., isolated from oil palm (Elaeis guineensis) rhizosphere soil.	Sujarit K, Kudo T, Ohkuma M, Pathom-Aree W, Lumyong S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001298	2016

References

#9408	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40254
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#33899	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#120598	Collection of Institut Pasteur ; Curators of the CIP; CIP 108148
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces lilacinus (DSM 40254, ATCC 23930, CBS 914.68)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000715685

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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