Name: Streptomyces lilacinus 2305
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16160

Type strain:

Species: Streptomyces lilacinus

Strain Designation: 2305

Culture col. no.: DSM 40254, ATCC 23930, CBS 914.68, ETH 24214, IFO 12884, IFO 3944, IPV 1999, ISP 5254, JCM 4188, JCM 4648, NBRC 12884, NBRC 3944, RIA 1180, BCRC 12421, BCRC 15107, CECT 3264, CIP 108148, KCTC 9875, NRRL B-1968, CCRC 12421, KCC S-0188

Strain history: CIP <- 2003, JCM <- 1983, KCC <- M. Hamada <- Y. Okami (NIHJ 71) <- K. Nakazawa: strain 2305

NCBI tax ID(s): 68228 (species)

SI-ID 38291

ATCC 23930, IFO 3944, IFO 12884, JCM 4188, JCM 4648, DSM 40254, CCRC 12421, NRRL B-1968, DSM 40354, CBS 914.68, CECT 3264, KCTC 9875, NBRC 12884, NBRC 3944, LMG 20059, BCRC 12421, CIP 108148, BCRC 15107, CCRC 15107, VKM Ac-962

Other strains from Streptomyces lilacinus

S. lilacinus RLL 37, RR 37 A/9, DSM 40336, ATCC ...
S. lilacinus ST004785(HKI), JA04029a, JA04029b,

Section

Streptomyces lilacinus 2305 is an obligate aerobe, mesophilic, Gram-positive bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
filament-shaped
Gram-positive
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces lilacinus**
	Full Scientific Name (LPSN)	Streptomyces lilacinus (Nakazawa et al. 1956) Witt and Stackebrandt 1991

	Synonym	Streptoverticillium kashmirensis
	Synonym	Streptoverticillium kashmirense
	Synonym	"Streptomyces* kashmirensis"*
	Synonym	Streptoverticillium lilacinum
	Synonym	Streptomyces kashimirensis
	Synonym	"Streptomyces* lilacinus"*

Information on morphological and physiological properties Morphology

[Ref.: #120598]	Gram stain	positive

[Ref.: #120598]	Cell shape	filament-shaped

[Ref.: #120598]	Motility	no

[Ref.: #120598]

Hemolysis ability

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9408]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9408]

Culture medium growth

[Ref.: #9408]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9408]

Culture medium composition

expand / minimize

[Ref.: #33899]

Culture medium

MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum

[Ref.: #33899]

Culture medium growth

[Ref.: #33899]

Culture medium composition

expand / minimize

[Ref.: #120598]

Culture medium

CIP Medium 57

[Ref.: #120598]

Culture medium growth

[Ref.: #120598]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #9408]		growth	28 °C
[Ref.: #33899]		growth	30 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #120598]		growth	25-41 °C
[Ref.: #120598]	no	growth	10 °C
[Ref.: #120598]	no	growth	45 °C

[Ref.: #9408]	Temperature range	mesophilic
[Ref.: #33899]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #120598]	Temperature range	psychrophilic
[Ref.: #120598]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #120598]

Oxygen tolerance

obligate aerobe

[Ref.: #9408]

Name of produced compound

cladomycin

	Salt	Tested relation		Salt conc.
[Ref.: #120598]	NaCl		growth	0-2	%
[Ref.: #120598]	NaCl	no	growth	4	%
[Ref.: #120598]	NaCl	no	growth	6	%
[Ref.: #120598]	NaCl	no	growth	8	%
[Ref.: #120598]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120598]	citrate ChEBI	-	carbon source
[Ref.: #120598]	esculin ChEBI	+	hydrolysis
[Ref.: #120598]	hippurate ChEBI	-	hydrolysis
[Ref.: #120598]	nitrate ChEBI	-	reduction
[Ref.: #120598]	nitrate ChEBI	-	respiration
[Ref.: #120598]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #67770]		cladomycin	yes
[Ref.: #120598]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #120598]		acetoin ChEBI	-
[Ref.: #120598]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120598]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120598]	amylase	+
[Ref.: #120598]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120598]	caseinase	+	3.4.21.50
[Ref.: #120598]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #120598]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120598]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #120598]	gelatinase	+/-
[Ref.: #120598]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120598]	lipase	+
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120598]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120598]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120598]	oxidase	-
[Ref.: #120598]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #120598]	protease	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120598]	tryptophan deaminase	-
[Ref.: #120598]	tween esterase	+
[Ref.: #120598]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #120598]	2606	not determinedn.d.	+	-	-	+	+	-	-	-	-	+	+	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	+	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	+	+	-	-	-	+	-	+	-	+	+	+	+	-	+	+	-	+	+	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120598]	10928	-	+	+	+	-	+	+	+	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9408]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Ichinoseki, Fukushima Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia

[Ref.: #120598]	Sample type/isolated from	Environment, Soil
[Ref.: #120598]	Geographic location (country and/or sea, region)	Ichinoseki
[Ref.: #120598]	Country	Japan
[Ref.: #120598]	Country ISO 3 Code	JPN
[Ref.: #120598]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9408]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120598]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces lilacinus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4188	D44027	121	ENA	68228 tax ID	*
[Ref.: #20218]	Streptomyces lilacinus 16S rRNA gene, type strain LMG 20059	AJ781346	1476	ENA	68228 tax ID	*
[Ref.: #20218]	Streptomyces lilacinus gene for 16S rRNA, partial sequence, strain: NBRC 12884	AB249906	1475	ENA	68228 tax ID	*
[Ref.: #20218]	Streptomyces lilacinus gene for 16S rRNA, partial sequence, strain: NBRC 3944	AB184819	1475	ENA	68228 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces lilacinus NRRL B-1968	GCA_000715685	scaffold	GenBank	68228 tax ID

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces lilacinus NRRL B-1968 NCBI: GCA_000715685.1
[Ref.: #69480]	motile	no	94.361	no
[Ref.: #69480]	flagellated	no	98.373	no
[Ref.: #69480]	gram-positive	yes	90.574	no
[Ref.: #69480]	anaerobic	no	99.279	no
[Ref.: #69480]	halophile	no	95.467	no
[Ref.: #69480]	spore-forming	yes	94.923	no
[Ref.: #69480]	thermophile	no	95.394	yes
[Ref.: #69480]	glucose-util	yes	91.141	no
[Ref.: #69480]	aerobic	yes	90.567	no
[Ref.: #69480]	glucose-ferment	no	90.897	no

Availability in culture collections External links

[Ref.: #9408]

Culture collection no.

DSM 40254, ATCC 23930, CBS 914.68, ETH 24214, IFO 12884, IFO 3944, IPV 1999, ISP 5254, JCM 4188, JCM 4648, NBRC 12884, NBRC 3944, RIA 1180, BCRC 12421, BCRC 15107, CECT 3264, CIP 108148, KCTC 9875, NRRL B-1968, CCRC 12421, KCC S-0188

[Ref.: #85225]

SI-ID 38291

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Taxonomy and Broad-Spectrum Antifungal Activity of Streptomyces sp. SCA3-4 Isolated From Rhizosphere Soil of Opuntia stricta.	Qi D, Zou L, Zhou D, Chen Y, Gao Z, Feng R, Zhang M, Li K, Xie J, Wang W	Front Microbiol	10.3389/fmicb.2019.01390	2019	*
Phylogeny	Streptomyces palmae sp. nov., isolated from oil palm (Elaeis guineensis) rhizosphere soil.	Sujarit K, Kudo T, Ohkuma M, Pathom-Aree W, Lumyong S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001298	2016	*
Genetics	Strain-specific proteogenomics accelerates the discovery of natural products via their biosynthetic pathways.	Albright JC, Goering AW, Doroghazi JR, Metcalf WW, Kelleher NL	J Ind Microbiol Biotechnol	10.1007/s10295-013-1373-4	2013	*

References

#9408

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40254

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33899 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#85225

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38291.1 )

#120598 Collection of Institut Pasteur ; Curators of the CIP; CIP 108148
* These data were automatically processed and therefore are not curated

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Streptomyces lilacinus NRRL B-1968

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