Strain identifier
BacDive ID: 16159
Type strain: 
Species: Streptomyces lavenduligriseus
Strain Designation: BA-6903 = FD 2212
Strain history: KCC S-0779 <-- IFO 13405 <-- SAJ <-- ISP 5487 <-- J. B. Routien BA-6903.
NCBI tax ID(s): 67315 (species)
version 8.1 (current version)
General
@ref: 9592
BacDive-ID: 16159
DSM-Number: 40487
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, antibiotic compound production
description: Streptomyces lavenduligriseus BA-6903 = FD 2212 is a mesophilic bacterium that produces antibiotic compounds and was isolated from Soil.
NCBI tax id
- NCBI tax id: 67315
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9592 | <- E.B. Shirling, ISP <- J.B. Routien, Chas. Pfizer & Co., BA-6903 = FD 22124 |
| 67770 | KCC S-0779 <-- IFO 13405 <-- SAJ <-- ISP 5487 <-- J. B. Routien BA-6903. |
doi: 10.13145/bacdive16159.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces lavenduligriseus
- full scientific name: Streptomyces lavenduligriseus (Locci et al. 1969) Witt and Stackebrandt 1991
synonyms
- @ref: 20215
- synonym: Streptoverticillium lavenduligriseum
@ref: 9592
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces lavenduligriseus
full scientific name: Streptomyces lavenduligriseus (Locci et al. 1969) Witt and Stackebrandt 1991
strain designation: BA-6903 = FD 2212
type strain: yes
Morphology
multimedia
- @ref: 9592
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40487.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 9592 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 9592 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 9592 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
compound production
| @ref | compound |
|---|---|
| 9592 | narangomycin |
| 67770 | Narangomycin |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil
- geographic location: Malaya
- country: Malaysia
- origin.country: MYS
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_7748.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_287;98_1422;99_7748&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: AB184382
- Sequence Identity:
- Total samples: 72
- soil counts: 63
- aquatic counts: 1
- animal counts: 5
- plant counts: 3
Safety information
risk assessment
- @ref: 9592
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces lavenduligriseus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4545 | D44224 | 120 | ena | 67315 |
| 20218 | Streptomyces lavenduligriseus gene for 16S rRNA, partial sequence, strain: NBRC 13405 | AB184382 | 1448 | ena | 67315 |
| 20218 | Streptomyces lavenduligriseus strain NRRL B-3173T 16S ribosomal RNA gene, partial sequence | DQ442515 | 1495 | ena | 67315 |
Genome sequences
- @ref: 67770
- description: Streptomyces lavenduligriseus NRRL ISP-5487
- accession: GCA_000718625
- assembly level: contig
- database: ncbi
- NCBI tax ID: 67315
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 93.967 | no |
| flagellated | no | 98.139 | no |
| gram-positive | yes | 90.451 | no |
| anaerobic | no | 99.218 | no |
| halophile | no | 94.211 | no |
| spore-forming | yes | 96.507 | no |
| thermophile | no | 96.046 | yes |
| glucose-util | yes | 89.908 | no |
| aerobic | yes | 93.643 | no |
| glucose-ferment | no | 90.193 | no |
External links
@ref: 9592
culture collection no.: DSM 40487, AS 4.1851, ATCC 13306, CBS 706.72, IFO 13405, ISP 5487, NBRC 13405, NRRL B-3173, RIA 1366, JCM 4779, ATCC 29661, BCRC 15166, CGMCC 4.1913, JCM 4545, NRRL ISP-5487, VKM Ac-1159
straininfo link
- @ref: 85224
- straininfo: 389367
literature
| Pubmed-ID | title | authors | journal | DOI | year | topic | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| 16233097 | Microbial synthesis of three metabolites of a tachykinin receptor antagonist, TAK-637. | Tarui N, Ikeura Y, Natsugari H, Nakahama K | J Biosci Bioeng | 10.1263/jbb.92.285 | 2001 | |||
| 20173013 | Streptomyces lacticiproducens sp. nov., a lactic acid-producing streptomycete isolated from the rhizosphere of tomato plants. | Zhu HH, Yao Q, Yang SZ, Li ZK, Guo J | Int J Syst Evol Microbiol | 10.1099/ijs.0.019125-0 | 2010 | Phylogeny | Anti-Infective Agents/metabolism, China, Cluster Analysis, Culture Media/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Lycopersicon esculentum/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/cytology, Streptomyces/*classification/genetics/*isolation & purification/physiology | Genetics |
| 28984216 | Streptomyces roietensis sp. nov., an endophytic actinobacterium isolated from the surface-sterilized stem of jasmine rice, Oryza sativa KDML 105. | Kaewkla O, Franco CMM | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002402 | 2017 | Phylogeny | Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Oryza/*microbiology, *Phylogeny, Plant Stems/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Thailand | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9592 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40487) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40487 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 85224 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID389367.1 | StrainInfo: A central database for resolving microbial strain identifiers |