Name: Streptomyces zaomyceticus DSM 40196
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16134

Type strain:

Species: Streptomyces zaomyceticus

Culture col. no.: DSM 40196, ATCC 27482, CBS 649.72, IFO 13348, ISP 5196, JCM 4179, JCM 4864, KCC S-0179, KCC S-0864, NBRC 13348, NRRL B-2038, RIA 1309, MTHU N-187, BCRC 12317, CGMCC 4.1953, NCIMB 9850, VKM Ac-1192

Strain history: KCC S-0179 <-- M. Mayama <-- Y. Hinuma N-187.

NCBI tax ID(s): 68286 (species)

SI-ID 39023

ATCC 27482, IFO 13348, DSM 40196, JCM 4179, JCM 4864, NRRL B-2038, CCRC 12317, NCIMB 9850, VKM Ac-1192, CBS 649.72, IMET 43841, NBRC 13348, LMG 19853, BCRC 12317, NCIB 9850, CGMCC 4.1953

Special Collections

Other strains from Streptomyces zaomyceticus

Section

Streptomyces zaomyceticus DSM 40196 is a spore-forming bacterium that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces zaomyceticus**
	Full Scientific Name (LPSN)	Streptomyces zaomyceticus Hinuma 1954 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %92.238

[Ref.: #19422]	Colony color	Brown
[Ref.: #19422]	Incubation period	10-14 days
[Ref.: #19422]	Cultivation medium used	ISP 2

[Ref.: #19422]	Colony color	Ivory
[Ref.: #19422]	Incubation period	10-14 days
[Ref.: #19422]	Cultivation medium used	ISP 3

[Ref.: #19422]	Colony color	Ivory
[Ref.: #19422]	Incubation period	10-14 days
[Ref.: #19422]	Cultivation medium used	ISP 4

[Ref.: #19422]	Colony color	Ivory
[Ref.: #19422]	Incubation period	10-14 days
[Ref.: #19422]	Cultivation medium used	ISP 5

[Ref.: #19422]	Colony color	Ivory
[Ref.: #19422]	Incubation period	10-14 days
[Ref.: #19422]	Cultivation medium used	ISP 6

[Ref.: #19422]	Colony color	Brown
[Ref.: #19422]	Incubation period	10-14 days
[Ref.: #19422]	Cultivation medium used	ISP 7

[Ref.: #19422]	Multicellular complex forming ability	yes
[Ref.: #19422]	Multicellular complex name	Aerial Mycelium
[Ref.: #19422]	Multicellular complex color	White
[Ref.: #19422]	Medium Name (multicellularity)	ISP 2

[Ref.: #19422]	Multicellular complex forming ability	yes
[Ref.: #19422]	Multicellular complex name	Aerial Mycelium
[Ref.: #19422]	Multicellular complex color	White
[Ref.: #19422]	Medium Name (multicellularity)	ISP 3

[Ref.: #19422]	Multicellular complex forming ability	yes
[Ref.: #19422]	Multicellular complex name	Aerial Mycelium
[Ref.: #19422]	Multicellular complex color	White
[Ref.: #19422]	Medium Name (multicellularity)	ISP 4

[Ref.: #19422]	Multicellular complex forming ability	yes
[Ref.: #19422]	Multicellular complex name	Aerial Mycelium
[Ref.: #19422]	Multicellular complex color	White
[Ref.: #19422]	Medium Name (multicellularity)	ISP 5

[Ref.: #19422]	Multicellular complex forming ability	yes
[Ref.: #19422]	Multicellular complex name	Aerial Mycelium
[Ref.: #19422]	Multicellular complex color	White
[Ref.: #19422]	Medium Name (multicellularity)	ISP 6

[Ref.: #19422]	Multicellular complex forming ability	no
[Ref.: #19422]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9257]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9257]

Culture medium growth

[Ref.: #9257]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9257]

Culture medium composition

expand / minimize

[Ref.: #19422]

Culture medium

ISP 2

[Ref.: #19422]

Culture medium growth

[Ref.: #19422]

Culture medium composition

expand / minimize

[Ref.: #19422]

Culture medium

ISP 3

[Ref.: #19422]

Culture medium growth

[Ref.: #19422]

Culture medium composition

expand / minimize

[Ref.: #19422]

Culture medium

ISP 4

[Ref.: #19422]

Culture medium growth

[Ref.: #19422]

Culture medium composition

expand / minimize

[Ref.: #19422]

Culture medium

ISP 5

[Ref.: #19422]

Culture medium growth

[Ref.: #19422]

Culture medium composition

expand / minimize

[Ref.: #19422]

Culture medium

ISP 6

[Ref.: #19422]

Culture medium growth

[Ref.: #19422]

Culture medium composition

expand / minimize

[Ref.: #19422]

Culture medium

ISP 7

[Ref.: #19422]

Culture medium growth

[Ref.: #19422]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #9257]	growth	28 °C
[Ref.: #19422]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19422]	Spore description	Formation of spore chains: rectiflixibilis, spore surface: smooth
[Ref.: #19422]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %92.339
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #9257]	Name of produced compound	zaomycin
[Ref.: #20216]	Name of produced compound	Zaomycin
[Ref.: #67770]	Name of produced compound	Zaomycin

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19422]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19422]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #19422]	fructose ChEBI	+/-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19422]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #19422]	mannitol ChEBI	+/-
[Ref.: #19422]	myo-inositol ChEBI	+/-
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #19422]	raffinose ChEBI	-
[Ref.: #19422]	rhamnose ChEBI	-
[Ref.: #19422]	sucrose ChEBI	+/-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19422]	xylose ChEBI	+/-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19422]	286	+	+	+	+	+	+	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9257]	Sample type/isolated from	soil
[Ref.: #9257]	Country	Japan
[Ref.: #9257]	Country ISO 3 Code	JPN
[Ref.: #9257]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Mt. Zao, Yamagata Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF178685 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	336
Soil Samples	6254
Animal Samples	471
Plant Samples	2191
Total Samples	9252

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9257]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19422]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces zaomyceticus gene for 16S rRNA, partial sequence	AB122759	564	GenBank ENA	68286 tax ID	*
[Ref.: #20218]	Streptomyces zaomyceticus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4864	D44414	120	GenBank ENA	68286 tax ID	*
[Ref.: #20218]	Streptomyces zaomyceticus gene for 16S rRNA, partial sequence, strain: NBRC 13348	AB184346	1467	GenBank ENA	68286 tax ID	*
[Ref.: #20218]	Streptomyces zaomyceticus strain NRRL B-2038 16S ribosomal RNA gene, partial sequence	EF178685	1487	GenBank ENA	68286 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces zaomyceticus JCM 4864	GCA_014656215	contig	GenBank ENA	68286 tax ID	*
[Ref.: #66792]	Streptomyces zaomyceticus strain JCM 4864	68286.5	wgs	PATRIC	68286 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces zaomyceticus strain JCM 4864 PATRIC: 68286.5
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces zaomyceticus strain JCM 4864 PATRIC: 68286.5
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.238	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.297	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.339	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.118	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.991	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89.6	no

Availability in culture collections External links

[Ref.: #9257]

Culture collection no.

DSM 40196, ATCC 27482, CBS 649.72, IFO 13348, ISP 5196, JCM 4179, JCM 4864, KCC S-0179, KCC S-0864, NBRC 13348, NRRL B-2038, RIA 1309, MTHU N-187, BCRC 12317, CGMCC 4.1953, NCIMB 9850, VKM Ac-1192

[Ref.: #85199]

SI-ID 39023

References

#9257

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40196

#19422

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85199

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID39023.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces zaomyceticus in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Streptomyces zaomyceticus strain JCM 4864

Streptomyces zaomyceticus strain JCM 4864

Change proposal

Change proposal