Streptomyces abikoensis 486 is a mesophilic prokaryote that was isolated from soil.
mesophilic 16S sequence
SI-ID 319108
| @ref 20215 |
|
Last LPSN update
2026-02-09 11:21:53 |
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Kitasatosporales |
| Family Streptomycetaceae |
| Genus Streptomyces |
| Species Streptomyces abikoensis |
| Full scientific name Streptomyces abikoensis (Umezawa et al. 1951) Witt and Stackebrandt 1991 |
|
Synonyms (20)
"Streptomyces abikoensum"
"Streptomyces luteoverticillatus" Streptomyces olivoreticuli Streptoverticillium olivoreticulum "Streptomyces hesseae" Streptoverticillium parvisporogenum Streptoverticillium ehimense Streptoverticillium parvisporogenes Streptomyces parvisporogenes Streptomyces ekimensis "Streptomyces olivoreticuli" Streptomyces ehimensis Streptoverticillium abikoense Streptoverticillium olivoreticuli subsp. cellulophilum "Streptomyces abikoensis" Streptoverticillium olivoreticulum subsp. cellulophilum Streptoverticillium olivoreticuli "Streptomyces ehimensis" Streptoverticillium luteoverticillatum Streptomyces luteoverticillatus |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 9117 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | Medium recipe at MediaDive  | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 |   |
|
| 66794 | threonine metabolism | 100 | 10 of 10 | |
|
| 66794 | phenylacetate degradation (aerobic) | 100 | 5 of 5 | |
|
| 66794 | aclacinomycin biosynthesis | 100 | 7 of 7 | |
|
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | |
|
| 66794 | cardiolipin biosynthesis | 100 | 7 of 7 | |
|
| 66794 | ethanol fermentation | 100 | 2 of 2 | |
|
| 66794 | acetate fermentation | 100 | 4 of 4 | |
|
| 66794 | adipate degradation | 100 | 2 of 2 | |
|
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | |
|
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | |
|
| 66794 | molybdenum cofactor biosynthesis | 100 | 9 of 9 | |
|
| 66794 | valine metabolism | 100 | 9 of 9 | |
|
| 66794 | glycolate and glyoxylate degradation | 100 | 6 of 6 | |
|
| 66794 | cyanate degradation | 100 | 3 of 3 | |
|
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | |
|
| 66794 | folate polyglutamylation | 100 | 1 of 1 | |
|
| 66794 | taurine degradation | 100 | 1 of 1 | |
|
| 66794 | ceramide biosynthesis | 100 | 1 of 1 | |
|
| 66794 | aerobactin biosynthesis | 100 | 1 of 1 | |
|
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | |
|
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | |
|
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | |
|
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | |
|
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | |
|
| 66794 | glycine betaine biosynthesis | 100 | 5 of 5 | |
|
| 66794 | cellulose degradation | 100 | 5 of 5 | |
|
| 66794 | phenylalanine metabolism | 92.31 | 12 of 13 | |
|
| 66794 | leucine metabolism | 92.31 | 12 of 13 | |
|
| 66794 | pentose phosphate pathway | 90.91 | 10 of 11 | |
|
| 66794 | myo-inositol biosynthesis | 90 | 9 of 10 | |
|
| 66794 | d-mannose degradation | 88.89 | 8 of 9 | |
|
| 66794 | aspartate and asparagine metabolism | 88.89 | 8 of 9 | |
|
| 66794 | CO2 fixation in Crenarchaeota | 88.89 | 8 of 9 | |
|
| 66794 | serine metabolism | 88.89 | 8 of 9 | |
|
| 66794 | ketogluconate metabolism | 87.5 | 7 of 8 | |
|
| 66794 | C4 and CAM-carbon fixation | 87.5 | 7 of 8 | |
|
| 66794 | gluconeogenesis | 87.5 | 7 of 8 | |
|
| 66794 | propanol degradation | 85.71 | 6 of 7 | |
|
| 66794 | photosynthesis | 85.71 | 12 of 14 | |
|
| 66794 | reductive acetyl coenzyme A pathway | 85.71 | 6 of 7 | |
|
| 66794 | heme metabolism | 85.71 | 12 of 14 | |
|
| 66794 | ubiquinone biosynthesis | 85.71 | 6 of 7 | |
|
| 66794 | glutamate and glutamine metabolism | 85.71 | 24 of 28 | |
|
| 66794 | NAD metabolism | 83.33 | 15 of 18 | |
|
| 66794 | glycolysis | 82.35 | 14 of 17 | |
|
| 66794 | proline metabolism | 81.82 | 9 of 11 | |
|
| 66794 | metabolism of amino sugars and derivatives | 80 | 4 of 5 | |
|
| 66794 | Entner Doudoroff pathway | 80 | 8 of 10 | |
|
| 66794 | ethylmalonyl-CoA pathway | 80 | 4 of 5 | |
|
| 66794 | flavin biosynthesis | 80 | 12 of 15 | |
|
| 66794 | starch degradation | 80 | 8 of 10 | |
|
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | |
|
| 66794 | propionate fermentation | 80 | 8 of 10 | |
|
| 66794 | glycogen metabolism | 80 | 4 of 5 | |
|
| 66794 | alanine metabolism | 79.31 | 23 of 29 | |
|
| 66794 | purine metabolism | 78.72 | 74 of 94 | |
|
| 66794 | citric acid cycle | 78.57 | 11 of 14 | |
|
| 66794 | allantoin degradation | 77.78 | 7 of 9 | |
|
| 66794 | 4-hydroxymandelate degradation | 77.78 | 7 of 9 | |
|
| 66794 | chorismate metabolism | 77.78 | 7 of 9 | |
|
| 66794 | lipid metabolism | 77.42 | 24 of 31 | |
|
| 66794 | methionine metabolism | 76.92 | 20 of 26 | |
|
| 66794 | urea cycle | 76.92 | 10 of 13 | |
|
| 66794 | tryptophan metabolism | 76.32 | 29 of 38 | |
|
| 66794 | arginine metabolism | 75 | 18 of 24 | |
|
| 66794 | carnitine metabolism | 75 | 6 of 8 | |
|
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | |
|
| 66794 | isoleucine metabolism | 75 | 6 of 8 | |
|
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 75 | 6 of 8 | |
|
| 66794 | sulfopterin metabolism | 75 | 3 of 4 | |
|
| 66794 | biotin biosynthesis | 75 | 3 of 4 | |
|
| 66794 | butanoate fermentation | 75 | 3 of 4 | |
|
| 66794 | vitamin B12 metabolism | 73.53 | 25 of 34 | |
|
| 66794 | isoprenoid biosynthesis | 73.08 | 19 of 26 | |
|
| 66794 | metabolism of disaccharids | 72.73 | 8 of 11 | |
|
| 66794 | histidine metabolism | 72.41 | 21 of 29 | |
|
| 66794 | cysteine metabolism | 72.22 | 13 of 18 | |
|
| 66794 | tetrahydrofolate metabolism | 71.43 | 10 of 14 | |
|
| 66794 | glutathione metabolism | 71.43 | 10 of 14 | |
|
| 66794 | pyrimidine metabolism | 71.11 | 32 of 45 | |
|
| 66794 | vitamin B1 metabolism | 69.23 | 9 of 13 | |
|
| 66794 | degradation of sugar alcohols | 68.75 | 11 of 16 | |
|
| 66794 | non-pathway related | 68.42 | 26 of 38 | |
|
| 66794 | oxidative phosphorylation | 68.13 | 62 of 91 | |
|
| 66794 | methane metabolism | 66.67 | 2 of 3 | |
|
| 66794 | acetyl CoA biosynthesis | 66.67 | 2 of 3 | |
|
| 66794 | IAA biosynthesis | 66.67 | 2 of 3 | |
|
| 66794 | 1,4-dihydroxy-6-naphthoate biosynthesis | 66.67 | 4 of 6 | |
|
| 66794 | degradation of aromatic, nitrogen containing compounds | 66.67 | 8 of 12 | |
|
| 66794 | octane oxidation | 66.67 | 2 of 3 | |
|
| 66794 | enterobactin biosynthesis | 66.67 | 2 of 3 | |
|
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | |
|
| 66794 | acetoin degradation | 66.67 | 2 of 3 | |
|
| 66794 | tyrosine metabolism | 64.29 | 9 of 14 | |
|
| 66794 | d-xylose degradation | 63.64 | 7 of 11 | |
|
| 66794 | lysine metabolism | 61.9 | 26 of 42 | |
|
| 66794 | sulfate reduction | 61.54 | 8 of 13 | |
|
| 66794 | factor 420 biosynthesis | 60 | 3 of 5 | |
|
| 66794 | glycine metabolism | 60 | 6 of 10 | |
|
| 66794 | hydrogen production | 60 | 3 of 5 | |
|
| 66794 | lipoate biosynthesis | 60 | 3 of 5 | |
|
| 66794 | elloramycin biosynthesis | 60 | 3 of 5 | |
|
| 66794 | phenol degradation | 60 | 12 of 20 | |
|
| 66794 | 3-phenylpropionate degradation | 60 | 9 of 15 | |
|
| 66794 | androgen and estrogen metabolism | 56.25 | 9 of 16 | |
|
| 66794 | daunorubicin biosynthesis | 55.56 | 5 of 9 | |
|
| 66794 | degradation of hexoses | 55.56 | 10 of 18 | |
|
| 66794 | carotenoid biosynthesis | 54.55 | 12 of 22 | |
|
| 66794 | phenylpropanoid biosynthesis | 53.85 | 7 of 13 | |
|
| 66794 | 4-hydroxyphenylacetate degradation | 50 | 5 of 10 | |
|
| 66794 | ribulose monophosphate pathway | 50 | 1 of 2 | |
|
| 66794 | mannosylglycerate biosynthesis | 50 | 1 of 2 | |
|
| 66794 | quinate degradation | 50 | 1 of 2 | |
|
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | |
|
| 66794 | lactate fermentation | 50 | 2 of 4 | |
|
| 66794 | grixazone biosynthesis | 50 | 1 of 2 | |
|
| 66794 | toluene degradation | 50 | 2 of 4 | |
|
| 66794 | vitamin E metabolism | 50 | 2 of 4 | |
|
| 66794 | cyclohexanol degradation | 50 | 2 of 4 | |
|
| 66794 | aminopropanol phosphate biosynthesis | 50 | 1 of 2 | |
|
| 66794 | kanosamine biosynthesis II | 50 | 1 of 2 | |
|
| 66794 | bile acid biosynthesis, neutral pathway | 47.06 | 8 of 17 | |
|
| 66794 | degradation of pentoses | 46.43 | 13 of 28 | |
|
| 66794 | vitamin B6 metabolism | 45.45 | 5 of 11 | |
|
| 66794 | cholesterol biosynthesis | 45.45 | 5 of 11 | |
|
| 66794 | lipid A biosynthesis | 44.44 | 4 of 9 | |
|
| 66794 | vitamin K metabolism | 40 | 2 of 5 | |
|
| 66794 | coenzyme M biosynthesis | 40 | 4 of 10 | |
|
| 66794 | bacilysin biosynthesis | 40 | 2 of 5 | |
|
| 66794 | D-cycloserine biosynthesis | 40 | 2 of 5 | |
|
| 66794 | 3-chlorocatechol degradation | 40 | 2 of 5 | |
|
| 66794 | gallate degradation | 40 | 2 of 5 | |
|
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | |
|
| 66794 | degradation of sugar acids | 40 | 10 of 25 | |
|
| 66794 | polyamine pathway | 39.13 | 9 of 23 | |
|
| 66794 | chlorophyll metabolism | 38.89 | 7 of 18 | |
|
| 66794 | dTDPLrhamnose biosynthesis | 37.5 | 3 of 8 | |
|
| 66794 | ascorbate metabolism | 36.36 | 8 of 22 | |
|
| 66794 | selenocysteine biosynthesis | 33.33 | 2 of 6 | |
|
| 66794 | pantothenate biosynthesis | 33.33 | 2 of 6 | |
|
| 66794 | sulfoquinovose degradation | 33.33 | 1 of 3 | |
|
| 66794 | nitrate assimilation | 33.33 | 3 of 9 | |
|
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | |
|
| 66794 | sphingosine metabolism | 33.33 | 2 of 6 | |
|
| 66794 | phosphatidylethanolamine bioynthesis | 30.77 | 4 of 13 | |
|
| 66794 | benzoyl-CoA degradation | 28.57 | 2 of 7 | |
|
| 66794 | arachidonic acid metabolism | 27.78 | 5 of 18 | |
|
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | |
|
| 66794 | catecholamine biosynthesis | 25 | 1 of 4 | |
|
| 66794 | methanogenesis from CO2 | 25 | 3 of 12 | |
|
| 66794 | CMP-KDO biosynthesis | 25 | 1 of 4 | |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Streptomyces luteoverticillatus gene for 16S rRNA, partial sequence, strain: NBRC 3840 | AB184803 | 1448 |   | 66425 |  |
| 20218 | Streptomyces abikoensis gene for 16S rRNA, partial sequence, strain: NBRC 12887 | AB249967 | 1477 | | 97398 | |
| 20218 | Streptomyces luteoverticillatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4099 | D44006 | 120 | | 66425 | |
| 20218 | Streptomyces luteoverticillatus strain NBRC 12887 16S ribosomal RNA gene, partial sequence | JN566036 | 1372 | | 66425 | |
| 124043 | Streptomyces luteoverticillatus strain CGMCC 4.1974 16S ribosomal RNA gene, partial sequence. | HQ244460 | 1380 | | 66425 | |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Phylogenetic relationships in the family Streptomycetaceae using multi-locus sequence analysis. | Labeda DP, Dunlap CA, Rong X, Huang Y, Doroghazi JR, Ju KS, Metcalf WW. | Antonie Van Leeuwenhoek | 10.1007/s10482-016-0824-0 | 2017 | |
| Phylogeny | Streptomyces endocoffeicus sp. nov., an endophytic actinomycete isolated from Coffea arabica (L.). | Nammali A, Intaraudom C, Pittayakhajonwut P, Suriyachadkun C, Tadtong S, Tanasupawat S, Thawai C | Antonie Van Leeuwenhoek | 10.1007/s10482-021-01648-x | 2021 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive16135.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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