Name: Streptomyces xantholiticus DSM 40244
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16130

Type strain:

Species: Streptomyces xantholiticus

Culture col. no.: DSM 40244, ATCC 27481, CBS 655.72, CGMCC AS 4.1379, IFO 13354, ISP 5244, JCM 4282, JCM 4863, NBRC 13354, RIA 1315, LIA 1130/12, BCRC 12646, CGMCC 4.1379, NCIMB 9857, NRRL B-12153, VKM Ac-1872, VTT E-011972

Strain history: KCC S-0282 <-- LIA 0017 (1130/12).

NCBI tax ID(s): 68285 (species)

SI-ID 92647

LMG 19402, ATCC 27481, CCRC 12646, DSM 40244, IFO 13354, JCM 4282, JCM 4863, NCIMB 9857, NRRL B-12153, VKM Ac-1872, CBS 655.72, NBRC 13354, AS 4.1379, BCRC 12646, NCIB 9857, CGMCC 4.1379, VTT E-011972

Special Collections

DSMZ
JCM

Section

Streptomyces xantholiticus DSM 40244 is a spore-forming bacterium that produces antibiotic compounds and was isolated from Soil.

antibiotic compound production
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces xantholiticus**
	Full Scientific Name (LPSN)	Streptomyces xantholiticus (Konev and Tsyganov 1962) Pridham 1970 (Approved Lists 1980)

Synonym

"Actinomyces xantholiticus"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %91.746

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9403]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9403]

Culture medium growth

[Ref.: #9403]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9403]

Culture medium composition

expand / minimize

[Ref.: #9403]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #9403]

Culture medium growth

[Ref.: #9403]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9403]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %91.863

[Ref.: #69480]	Ability of spore formation	yes Confidence in %92.116
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #9403]	Name of produced compound	antibiotics 1130/12 (xanthalycin A, B)
[Ref.: #9403]	Name of produced compound	pentaene
[Ref.: #9403]	Name of produced compound	tetraene anti-fungals
[Ref.: #9403]	Name of produced compound	xanthalycine
[Ref.: #67770]	Name of produced compound	Polyene antibiotics

[Ref.: #67770]

Observation

quinones: MK-9(H₈), MK-9(H₆)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	near Kerch City
[Ref.: #67770]	Country	Ukraine
[Ref.: #67770]	Country ISO 3 Code	UKR
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9403]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces xantholiticus gene for 16S rRNA, partial sequence	AB122750	564	GenBank ENA	68285 tax ID	*
[Ref.: #20218]	Streptomyces xantholiticus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4863	D44413	120	GenBank ENA	68285 tax ID	*
[Ref.: #20218]	Streptomyces xantholiticus gene for 16S rRNA, partial sequence, strain: NBRC 13354	AB184349	1455	GenBank ENA	68285 tax ID	*
[Ref.: #124043]	Streptomyces xantholiticus strain NBRC 13354 16S ribosomal RNA gene, partial sequence.	OQ619102	1343	GenBank ENA	68285 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces xantholiticus JCM 4863	GCA_014651015	scaffold	GenBank ENA	68285 tax ID	*
[Ref.: #66792]	Streptomyces xantholiticus strain JCM 4863	68285.3	wgs	PATRIC	68285 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces xantholiticus JCM 4863 NCBI: GCA_014651015.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces xantholiticus JCM 4863 NCBI: GCA_014651015.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.746	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.494	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	91.863	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.116	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87.5	no

Availability in culture collections External links

[Ref.: #9403]

Culture collection no.

DSM 40244, ATCC 27481, CBS 655.72, CGMCC AS 4.1379, IFO 13354, ISP 5244, JCM 4282, JCM 4863, NBRC 13354, RIA 1315, LIA 1130/12, BCRC 12646, CGMCC 4.1379, NCIMB 9857, NRRL B-12153, VKM Ac-1872, VTT E-011972

[Ref.: #85195]

SI-ID 92647

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces formicae sp. nov., a novel actinomycete isolated from the head of Camponotus japonicus Mayr.	Bai L, Liu C, Guo L, Piao C, Li Z, Li J, Jia F, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0628-7	2015	*

References

#9403

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40244

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85195

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92647.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Streptomyces xantholiticus JCM 4863

Streptomyces xantholiticus JCM 4863

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