Strain identifier

BacDive ID: 16130

Type strain: Yes

Species: Streptomyces xantholiticus

Strain history: KCC S-0282 <-- LIA 0017 (1130/12).

NCBI tax ID(s): 68285 (species)

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General

@ref: 9403

BacDive-ID: 16130

DSM-Number: 40244

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces xantholiticus DSM 40244 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from Soil.

NCBI tax id

  • NCBI tax id: 68285
  • Matching level: species

strain history

@refhistory
9403<- E.B. Shirling, ISP <- Y.E. Konev, LIA, 1130/12
67770KCC S-0282 <-- LIA 0017 (1130/12).

doi: 10.13145/bacdive16130.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces xantholiticus
  • full scientific name: Streptomyces xantholiticus (Konev and Tsyganov 1962) Pridham 1970 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Actinomyces xantholiticus

@ref: 9403

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces xantholiticus

full scientific name: Streptomyces xantholiticus (Konev and Tsyganov 1962) Pridham 1970

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no93.915
69480100positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9403GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9403STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf

culture temp

@refgrowthtypetemperaturerange
9403positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

@refcompound
9403antibiotics 1130/12 (xanthalycin A, B)
9403pentaene
9403tetraene anti-fungals
9403xanthalycine
67770Polyene antibiotics

observation

  • @ref: 67770
  • observation: quinones: MK-9(H8), MK-9(H6)

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Soil
  • geographic location: near Kerch City
  • country: Ukraine
  • origin.country: UKR
  • continent: Europe

Safety information

risk assessment

  • @ref: 9403
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces xantholiticus gene for 16S rRNA, partial sequenceAB122750564ena68285
20218Streptomyces xantholiticus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4863D44413120ena68285
20218Streptomyces xantholiticus gene for 16S rRNA, partial sequence, strain: NBRC 13354AB1843491455ena68285

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces xantholiticus JCM 4863GCA_014651015scaffoldncbi68285
66792Streptomyces xantholiticus strain JCM 486368285.3wgspatric68285

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno98.028no
gram-positiveyes88.969no
anaerobicno98.607no
aerobicyes90.133no
halophileno92.117no
spore-formingyes95.221no
thermophileno97.823yes
glucose-utilyes90.868no
motileno94.076no
glucose-fermentno91.303no

External links

@ref: 9403

culture collection no.: DSM 40244, ATCC 27481, CBS 655.72, CGMCC AS 4.1379, IFO 13354, ISP 5244, JCM 4282, JCM 4863, NBRC 13354, RIA 1315, LIA 1130/12, BCRC 12646, CGMCC 4.1379, NCIMB 9857, NRRL B-12153, VKM Ac-1872, VTT E-011972

straininfo link

  • @ref: 85195
  • straininfo: 92647

literature

  • topic: Phylogeny
  • Pubmed-ID: 26608172
  • title: Streptomyces formicae sp. nov., a novel actinomycete isolated from the head of Camponotus japonicus Mayr.
  • authors: Bai L, Liu C, Guo L, Piao C, Li Z, Li J, Jia F, Wang X, Xiang W
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-015-0628-7
  • year: 2015
  • mesh: Animals, Ants/*microbiology, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Head/microbiology, Molecular Sequence Data, Phylogeny, Streptomyces/classification/genetics/*isolation & purification
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9403Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40244)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40244
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85195Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92647.1StrainInfo: A central database for resolving microbial strain identifiers