Name: Kitasatospora xanthocidica IPCR 51-4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16129

Type strain:

Species: Kitasatospora xanthocidica

Strain Designation: IPCR 51-4

Culture col. no.: DSM 40575, ATCC 27480, CBS 770.72, IFO 13469, ISP 5575, JCM 4243, JCM 4862, NBRC 13469, RIA 1430, BCRC 11874, CGMCC 4.1424, KCTC 19978, NRRL B-12504, VKM Ac-872

Strain history: KCC S-0243 <-- S. Suzuki 51-4.

NCBI tax ID(s): 83382 (species)

SI-ID 13367

LMG 19370, ATCC 27480, CCRC 11874, DSM 40575, IFO 13469, JCM 4243, JCM 4862, NRRL B-12504, VKM Ac-872, CBS 770.72, AS 4.1424, NBRC 13469, BCRC 11874, KCTC 19978, CGMCC 4.1424

Section

Kitasatospora xanthocidica IPCR 51-4 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from Soil.

antibiotic compound production
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Kitasatospora*
	Species	**Kitasatospora xanthocidica**
	Full Scientific Name (LPSN)	Kitasatospora xanthocidica (Asahi et al. 1966) Nouioui et al. 2018

Synonym

Streptomyces xanthocidicus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.196

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9656]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9656]

Culture medium growth

[Ref.: #9656]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9656]

Culture medium composition

expand / minimize

[Ref.: #9656]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #9656]

Culture medium growth

[Ref.: #9656]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9656]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9656]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9656]	Name of produced compound	xanthocidin
[Ref.: #20216]	Name of produced compound	Xanthocidin

	Metabolite production	Metabolite	Production
[Ref.: #67770]		xanthocidin	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Rikugo-machi, Yamanashi Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AY999858 (>99% sequence identity) for Streptomycetaceae from Microbeatlas

Aquatic Samples	54
Soil Samples	1733
Animal Samples	127
Plant Samples	125
Total Samples	2039

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9656]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces xanthocidicus strain IFO 13469 16S ribosomal RNA gene, partial sequence	AY999858	1420	ENA	83382 tax ID	*
[Ref.: #20218]	Streptomyces xanthocidicus gene for 16S rRNA, partial sequence	AB018208	120	ENA	83382 tax ID	*
[Ref.: #20218]	Streptomyces xanthocidicus gene for 16S rRNA, partial sequence, strain: NBRC 13469	AB184427	1457	ENA	83382 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kitasatospora xanthocidica JCM 4862	GCA_014656195	scaffold	GenBank	83382 tax ID	*
[Ref.: #66792]	Kitasatospora xanthocidica strain JCM 4862	83382.6	wgs	PATRIC	83382 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Kitasatospora xanthocidica JCM 4862 NCBI: GCA_014656195.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kitasatospora xanthocidica JCM 4862 NCBI: GCA_014656195.1
[Ref.: #69480]	flagellated	no	97.85	no
[Ref.: #69480]	gram-positive	yes	90.707	no
[Ref.: #69480]	anaerobic	no	99.204	no
[Ref.: #69480]	aerobic	yes	90.661	no
[Ref.: #69480]	halophile	no	94.49	no
[Ref.: #69480]	spore-forming	yes	93.579	no
[Ref.: #69480]	glucose-util	yes	91.836	no
[Ref.: #69480]	thermophile	no	98.826	no
[Ref.: #69480]	motile	no	93.98	no
[Ref.: #69480]	glucose-ferment	no	89.335	no

Availability in culture collections External links

[Ref.: #9656]

Culture collection no.

DSM 40575, ATCC 27480, CBS 770.72, IFO 13469, ISP 5575, JCM 4243, JCM 4862, NBRC 13469, RIA 1430, BCRC 11874, CGMCC 4.1424, KCTC 19978, NRRL B-12504, VKM Ac-872

[Ref.: #85194]

SI-ID 13367

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces lactacystinicus sp. nov. and Streptomyces cyslabdanicus sp. nov., producing lactacystin and cyslabdan, respectively.	Take A, Matsumoto A, Omura S, Takahashi Y	J Antibiot (Tokyo)	10.1038/ja.2014.162	2014	*

References

#9656

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40575

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85194

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13367.1 )

* These data were automatically processed and therefore are not curated

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Kitasatospora xanthocidica JCM 4862

Kitasatospora xanthocidica JCM 4862

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