Name: Streptomyces violascens DSM 40183
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16102

Type strain:

Species: Streptomyces violascens

Culture col. no.: DSM 40183, ATCC 23968, CBS 951.68, IFO 12920, INA 3959/54, ISP 5183, JCM 4424, NBRC 12920, RIA 1138, BCRC 12240, CBS 266.66, CECT 3215, CGMCC 4.1923, IMET 42061, KCTC 9785, NCIMB 9820, NRRL B-2700, VKM Ac-1275

Strain history: KCC S-0424 <-- Y. Okami <-- ISP 5183 <-- INA 3959/54.

NCBI tax ID(s): 67381 (species)

SI-ID 9652

ATCC 23968, IFO 12920, DSM 40183, JCM 4424, CCRC 12240, IMET 42061, NCIMB 9820, NRRL B-2700, VKM Ac-1275, CBS 951.68, CBS 266.66, CECT 3215, KCTC 9785, NBRC 12920, BCRC 12240, NCIB 9820, CGMCC 4.1923

Other strains from Streptomyces violascens

S. violascens DSM 41173, IMRU 3841
S. violascens ST004998(HKI), IMET 40225

Section

Streptomyces violascens DSM 40183 is a mesophilic bacterium that was isolated from soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces violascens**
	Full Scientific Name (LPSN)	Streptomyces violascens (Preobrazhenskaya and Sveshnikova 1957) Pridham et al. 1958 (Approved Lists 1980)

Synonym

"Actinomyces violascens"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9246]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9246]

Culture medium growth

[Ref.: #9246]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9246]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9246]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9246]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #9246]

Name of produced compound

nucleotide pyrophosphokinase

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9246]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9246]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces enissocaesilis gene for 16S ribosomal RNA, partial sequence, strain: NRRL B-16365	AB915613	1458	ENA	332589 tax ID	*
[Ref.: #20218]	Streptomyces violascens gene for 16S ribosomal RNA, partial sequence, strain: ISP 5183	AB915618	946	ENA	67381 tax ID	*
[Ref.: #20218]	Streptomyces violascens strain ISP 5183 16S ribosomal RNA gene, partial sequence	AY999737	1449	ENA	67381 tax ID	*
[Ref.: #20218]	Streptomyces violascens gene for 16S ribosomal RNA, partial sequence, strain: JCM 4424	D44136	120	ENA	67381 tax ID	*
[Ref.: #20218]	Streptomyces violascens gene for 16S rRNA, partial sequence, strain: NBRC 12920	AB184246	1474	ENA	67381 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces violascens JCM 4424	GCA_014649955	scaffold	GenBank	67381 tax ID	*
[Ref.: #66792]	Streptomyces violascens NBRC 12920	GCA_020521295	contig	GenBank	67381 tax ID	*
[Ref.: #66792]	Streptomyces violascens strain JCM 4424	67381.4	wgs	PATRIC	67381 tax ID	*
[Ref.: #66792]	Streptomyces violascens strain NBRC 12920	67381.10	wgs	PATRIC	67381 tax ID	*
[Ref.: #66792]	Streptomyces violascens strain NBRC 12920	67381.8	wgs	PATRIC	67381 tax ID	*
[Ref.: #66792]	Streptomyces violascens strain NBRC 12920	67381.9	wgs	PATRIC	67381 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces violascens JCM 4424 NCBI: GCA_014649955.1
[Ref.: #69480]	flagellated	no	98.126	no
[Ref.: #69480]	gram-positive	yes	89.004	no
[Ref.: #69480]	anaerobic	no	99.231	no
[Ref.: #69480]	aerobic	yes	92.119	no
[Ref.: #69480]	halophile	no	93.104	no
[Ref.: #69480]	spore-forming	yes	95.15	no
[Ref.: #69480]	glucose-util	yes	90.15	no
[Ref.: #69480]	thermophile	no	98.581	no
[Ref.: #69480]	motile	no	93.865	no
[Ref.: #69480]	glucose-ferment	no	89.452	no

Availability in culture collections External links

[Ref.: #9246]

Culture collection no.

DSM 40183, ATCC 23968, CBS 951.68, IFO 12920, INA 3959/54, ISP 5183, JCM 4424, NBRC 12920, RIA 1138, BCRC 12240, CBS 266.66, CECT 3215, CGMCC 4.1923, IMET 42061, KCTC 9785, NCIMB 9820, NRRL B-2700, VKM Ac-1275

[Ref.: #85168]

SI-ID 9652

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces atlanticus sp. nov., a novel actinomycete isolated from marine sponge Aplysina fulva (Pallas, 1766).	Silva FS, Souza DT, Zucchi TD, Pansa CC, de Figueiredo Vasconcellos RL, Crevelin EJ, de Moraes LA, Melo IS	Antonie Van Leeuwenhoek	10.1007/s10482-016-0748-8	2016	*

References

#9246

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40183

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#85168

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID9652.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces violascens JCM 4424

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