Name: Streptomyces violarus DSM 40205
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16101

Type strain:

Species: Streptomyces violarus

Culture col. no.: DSM 40205, ATCC 15891, ATCC 25516, CBS 658.69, IFO 13104, ISP 5205, JCM 4534, KCC S-0534, KCTC 9788, NBRC 13104, NRRL B-5432, RIA 1296, RIA 157, VKM Ac-528, NIHJ 493, BCRC 13791, CCT 5007, CECT 3237, CGMCC 4.1772, INMI 1212

Strain history: KCC S-0534 <-- IFO 13104 <-- SAJ <-- ISP 5205 <-- INMI 1212.

NCBI tax ID(s): 67380 (species)

SI-ID 83034

ATCC 15891, ATCC 25516, IFO 13104, DSM 40205, JCM 4534, CCT 5007, NRRL B-5432, VKM Ac-528, CBS 658.69, CECT 3237, KCTC 9788, NBRC 13104, BCRC 13791, CCRC 13791, CGMCC 4.1772, LMG 20275

Section

Streptomyces violarus DSM 40205 is a spore-forming, mesophilic, Gram-positive bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces violarus**
	Full Scientific Name (LPSN)	Streptomyces violarus (Artamonova and Krassilnikov 1960) Pridham 1970 (Approved Lists 1980)

Synonym

"Actinomyces violarus"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9378]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9378]

Culture medium growth

[Ref.: #9378]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9378]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9378]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9378]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9378]	Name of produced compound	antibiotic 12-12
[Ref.: #9378]	Name of produced compound	antibiotic 452-7
[Ref.: #9378]	Name of produced compound	rhodomycine
[Ref.: #9378]	Name of produced compound	violarin B

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9378]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9378]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces violarus partial 16S rRNA gene, strain ISP 5205	AJ399477	1447	ENA	67380 tax ID	*
[Ref.: #20218]	Streptomyces violarus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4534	D44219	120	ENA	67380 tax ID	*
[Ref.: #20218]	Streptomyces violarus gene for 16S rRNA, partial sequence, strain: NBRC 13104	AB184316	1474	ENA	67380 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces violarus CECT 3237	GCA_014191845	scaffold	GenBank	67380 tax ID	*
[Ref.: #66792]	Streptomyces violarus JCM 4534	GCA_014650255	scaffold	GenBank	67380 tax ID	*
[Ref.: #66792]	Streptomyces violarus strain CECT 3237	67380.3	wgs	PATRIC	67380 tax ID	*
[Ref.: #66792]	Streptomyces violarus strain JCM 4534	67380.4	wgs	PATRIC	67380 tax ID	*
[Ref.: #66792]	Streptomyces violarus CECT 3237	2824309123	draft	JGI IMG/M	67380 tax ID	*

[Ref.: #67770]

GC-content

74.7 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces violarus CECT 3237 NCBI: GCA_014191845.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces violarus CECT 3237 NCBI: GCA_014191845.1
[Ref.: #69480]	flagellated	no	97.477	no
[Ref.: #69480]	gram-positive	yes	88.49	no
[Ref.: #69480]	anaerobic	no	99.108	no
[Ref.: #69480]	aerobic	yes	92.882	no
[Ref.: #69480]	halophile	no	93.155	no
[Ref.: #69480]	spore-forming	yes	94.664	no
[Ref.: #69480]	glucose-util	yes	90.142	no
[Ref.: #69480]	thermophile	no	98.471	yes
[Ref.: #69480]	motile	no	92.729	no
[Ref.: #69480]	glucose-ferment	no	89.787	no

Availability in culture collections External links

[Ref.: #9378]

Culture collection no.

DSM 40205, ATCC 15891, ATCC 25516, CBS 658.69, IFO 13104, ISP 5205, JCM 4534, KCC S-0534, KCTC 9788, NBRC 13104, NRRL B-5432, RIA 1296, RIA 157, VKM Ac-528, NIHJ 493, BCRC 13791, CCT 5007, CECT 3237, CGMCC 4.1772, INMI 1212

[Ref.: #85167]

SI-ID 83034

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	A strain of Streptomyces sp. isolated from rhizospheric soil of Crataegus oxycantha producing nalidixic acid, a synthetic antibiotic.	Arora N, Kumar S, Satti NK, Ali A, Gupta P, Katoch M	J Appl Microbiol	10.1111/jam.13736	2018	*

References

#9378

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40205

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85167

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID83034.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces violarus CECT 3237

Streptomyces violarus CECT 3237

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