Strain identifier

BacDive ID: 16102

Type strain: Yes

Species: Streptomyces violascens

Strain history: KCC S-0424 <-- Y. Okami <-- ISP 5183 <-- INA 3959/54.

NCBI tax ID(s): 67381 (species)

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General

@ref: 9246

BacDive-ID: 16102

DSM-Number: 40183

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Streptomyces violascens DSM 40183 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 67381
  • Matching level: species

strain history

@refhistory
9246<- E.B. Shirling, ISP <- T.P. Preobrazhenskya, INA
67770KCC S-0424 <-- Y. Okami <-- ISP 5183 <-- INA 3959/54.

doi: 10.13145/bacdive16102.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces violascens
  • full scientific name: Streptomyces violascens (Preobrazhenskaya and Sveshnikova 1957) Pridham et al. 1958 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Actinomyces violascens

@ref: 9246

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces violascens

full scientific name: Streptomyces violascens (Preobrazhenskaya and Sveshnikova 1957) Pridham et al. 1958

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 9246
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9246positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

  • @ref: 9246
  • compound: nucleotide pyrophosphokinase

Isolation, sampling and environmental information

isolation

  • @ref: 9246
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 9246
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces enissocaesilis gene for 16S ribosomal RNA, partial sequence, strain: NRRL B-16365AB9156131458ena332589
20218Streptomyces violascens gene for 16S ribosomal RNA, partial sequence, strain: ISP 5183AB915618946ena67381
20218Streptomyces violascens strain ISP 5183 16S ribosomal RNA gene, partial sequenceAY9997371449ena67381
20218Streptomyces violascens gene for 16S ribosomal RNA, partial sequence, strain: JCM 4424D44136120ena67381
20218Streptomyces violascens gene for 16S rRNA, partial sequence, strain: NBRC 12920AB1842461474ena67381

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces violascens JCM 4424GCA_014649955scaffoldncbi67381
66792Streptomyces violascens NBRC 12920GCA_020521295contigncbi67381
66792Streptomyces violascens strain JCM 442467381.4wgspatric67381
66792Streptomyces violascens strain NBRC 1292067381.10wgspatric67381
66792Streptomyces violascens strain NBRC 1292067381.8wgspatric67381
66792Streptomyces violascens strain NBRC 1292067381.9wgspatric67381

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno98.126no
gram-positiveyes89.004no
anaerobicno99.231no
aerobicyes92.119no
halophileno93.104no
spore-formingyes95.15no
glucose-utilyes90.15no
thermophileno98.581no
motileno93.865no
glucose-fermentno89.452no

External links

@ref: 9246

culture collection no.: DSM 40183, ATCC 23968, CBS 951.68, IFO 12920, INA 3959/54, ISP 5183, JCM 4424, NBRC 12920, RIA 1138, BCRC 12240, CBS 266.66, CECT 3215, CGMCC 4.1923, IMET 42061, KCTC 9785, NCIMB 9820, NRRL B-2700, VKM Ac-1275

straininfo link

  • @ref: 85168
  • straininfo: 9652

literature

  • topic: Phylogeny
  • Pubmed-ID: 27566709
  • title: Streptomyces atlanticus sp. nov., a novel actinomycete isolated from marine sponge Aplysina fulva (Pallas, 1766).
  • authors: Silva FS, Souza DT, Zucchi TD, Pansa CC, de Figueiredo Vasconcellos RL, Crevelin EJ, de Moraes LA, Melo IS
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-016-0748-8
  • year: 2016
  • mesh: Animals, Molecular Typing, Phylogeny, Porifera/*microbiology, RNA, Bacterial, RNA, Ribosomal, 16S/genetics, Streptomyces/classification/*isolation & purification
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9246Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40183)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40183
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
85168Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID9652.1StrainInfo: A central database for resolving microbial strain identifiers