Name: Streptomyces violaceus DSM 40209
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16092

Type strain:

Species: Streptomyces violaceus

Culture col. no.: DSM 40209, AS 4.1378, ATCC 15892, CBS 650.72, IFO 13349, INMI 1205, ISP 5209, JCM 4237, JCM 4851, NBRC 13349, RIA 1310, RIA 708, NIHJ 493, BCRC 12462, CCT 5009, CGMCC 4.1378, LMG 19397, LMG 8592, NRRL B-2867, VKM Ac-532

Strain history: KCC S-0237 <-- Y. Okami (NIHJ 495) <-- ISP 5209 <-- INMI 1205.

NCBI tax ID(s): 37480 (species), 1936 (species)

Special Collections

DSMZ
JCM

Other strains from Streptomyces violaceus

Section

Streptomyces violaceus DSM 40209 is a spore-forming bacterium that was isolated from soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces violaceus**
	Full Scientific Name (LPSN)	Streptomyces violaceus (Rossi Doria 1891) Waksman 1953 (Approved Lists 1980)

	Synonym	"Actinomyces* violatus"*
	Synonym	"Streptotrix* violacea"*
	Synonym	Streptomyces violatus

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %91.996

[Ref.: #69480]

Ability of spore formation

yes Confidence in %91.922

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9381]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Krusk
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9381]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces violatus partial 16S rRNA gene, strain ISP 5209	AJ399480	1448	GenBank ENA	1936 tax ID
[Ref.: #20218]	Streptomyces violaceus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4237	D44037	121	GenBank ENA	1936 tax ID	*
[Ref.: #20218]	Streptomyces purpurascens gene for 16S rRNA, partial sequence, strain: NBRC 13349	AB184874	1466	GenBank ENA	1924 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces violaceus NRRL B-2867	GCA_000715635	scaffold	GenBank ENA	1936 tax ID

[Ref.: #67770]

GC-content

72 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces violaceus NRRL B-2867 NCBI: GCA_000715635.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.159	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.404	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	91.996	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	91.922	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89	no

Availability in culture collections External links

[Ref.: #9381]

Culture collection no.

DSM 40209, AS 4.1378, ATCC 15892, CBS 650.72, IFO 13349, INMI 1205, ISP 5209, JCM 4237, JCM 4851, NBRC 13349, RIA 1310, RIA 708, NIHJ 493, BCRC 12462, CCT 5009, CGMCC 4.1378, LMG 19397, LMG 8592, NRRL B-2867, VKM Ac-532

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	The search for synonyms among streptomycetes by using SDS-PAGE of whole-cell proteins. Emendation of the species Streptomyces aurantiacus, Streptomyces cacaoi subsp. cacaoi, Streptomyces caeruleus and Streptomyces violaceus.	Lanoot B, Vancanneyt M, Cleenwerck I, Wang L, Li W, Liu Z, Swings J	Int J Syst Evol Microbiol	10.1099/00207713-52-3-823	2002	*

References

#9381

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40209

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces pluricolorescens in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Streptomyces violaceus NRRL B-2867

Change proposal

Change proposal