Strain identifier
BacDive ID: 16092
Type strain: 
Species: Streptomyces violaceus
Strain history: KCC S-0237 <-- Y. Okami (NIHJ 495) <-- ISP 5209 <-- INMI 1205.
NCBI tax ID(s): 37480 (species), 1936 (species)
version 9.1 (current version)
General
@ref: 9381
BacDive-ID: 16092
DSM-Number: 40209
keywords: genome sequence, 16S sequence, Bacteria, spore-forming
description: Streptomyces violaceus DSM 40209 is a spore-forming bacterium that was isolated from soil.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 37480 | species |
| 1936 | species |
strain history
| @ref | history |
|---|---|
| 9381 | <- E.B. Shirling, ISP <- N.A. Krassilnikov, RIA |
| 67770 | KCC S-0237 <-- Y. Okami (NIHJ 495) <-- ISP 5209 <-- INMI 1205. |
doi: 10.13145/bacdive16092.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces violaceus
- full scientific name: Streptomyces violaceus (Rossi Doria 1891) Waksman 1953 (Approved Lists 1980)
synonyms
@ref synonym 20215 Actinomyces violatus 20215 Streptotrix violacea 20215 Streptomyces violatus
@ref: 9381
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces pluricolorescens
full scientific name: Streptomyces pluricolorescens Okami and Umezawa 1961
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: aerobe
- confidence: 91.996
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 91.922
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country |
|---|---|---|---|---|
| 9381 | soil | |||
| 67770 | Soil | Krusk | Russia | RUS |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 9381
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces purpurascens gene for 16S rRNA, partial sequence, strain: NBRC 13349 | AB184874 | 1466 | nuccore | 1924 |
| 20218 | Streptomyces violaceus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4237 | D44037 | 121 | nuccore | 1936 |
| 67770 | Streptomyces violatus partial 16S rRNA gene, strain ISP 5209 | AJ399480 | 1448 | nuccore | 1936 |
Genome sequences
- @ref: 67770
- description: Streptomyces violaceus NRRL B-2867
- accession: GCA_000715635
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 1936
GC content
- @ref: 67770
- GC-content: 72
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 88.159 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.404 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 91.996 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 91.922 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 89 | no |
External links
@ref: 9381
culture collection no.: DSM 40209, AS 4.1378, ATCC 15892, CBS 650.72, IFO 13349, INMI 1205, ISP 5209, JCM 4237, JCM 4851, NBRC 13349, RIA 1310, RIA 708, NIHJ 493, BCRC 12462, CCT 5009, CGMCC 4.1378, LMG 19397, LMG 8592, NRRL B-2867, VKM Ac-532
literature
- topic: Phylogeny
- Pubmed-ID: 12054245
- title: The search for synonyms among streptomycetes by using SDS-PAGE of whole-cell proteins. Emendation of the species Streptomyces aurantiacus, Streptomyces cacaoi subsp. cacaoi, Streptomyces caeruleus and Streptomyces violaceus.
- authors: Lanoot B, Vancanneyt M, Cleenwerck I, Wang L, Li W, Liu Z, Swings J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/00207713-52-3-823
- year: 2002
- mesh: Bacterial Proteins/*analysis, Bacterial Typing Techniques, Electrophoresis, Polyacrylamide Gel, Nucleic Acid Hybridization, Phenotype, Species Specificity, Streptomyces/*chemistry/*classification/genetics
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9381 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40209) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40209 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |