Streptomyces violaceochromogenes | Type strain | DSM 40181, ATCC 19932, ATCC 25512, CBS 654.69, IFO 13100, INA 425, ISP 5181, NBRC 13100, RIA 1292, JCM 4530, CGMCC 4.1753, KCTC 19974, NRRL B-5427, VKM Ac-581

Caption:

Medium 65 28°C

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Information on culture and growth conditions Culture and growth conditions

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

Culture medium growth

Medium recipe at MediaDive

Culture medium link

Culture medium composition

Culture medium

ISP 2

Culture medium growth

Culture medium composition

Culture medium

ISP 3

Culture medium growth

Culture medium composition

Culture medium

ISP 4

Culture medium growth

Culture medium composition

Culture medium

ISP 5

Culture medium growth

Culture medium composition

Culture medium

ISP 6

Culture medium growth

Culture medium composition

Culture medium

ISP 7

Culture medium growth

Culture medium composition

What are isolation sources categories?

		Temperature
[Ref.: #9245]	growth	28 °C
[Ref.: #19419]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9245]	Temperature range	mesophilic
[Ref.: #19419]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19419]	Spore description	Formation of spore chains: retinaculiapetri, spore surface: smooth
[Ref.: #19419]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19419]		NaCl		maximum	7.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19419]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19419]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #19419]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19419]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19419]	mannitol ChEBI	-
[Ref.: #19419]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19419]	raffinose ChEBI	-
[Ref.: #19419]	rhamnose ChEBI	-
[Ref.: #19419]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19419]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19419]	283	+	-	-	-	-	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9245]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9245]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19419]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces sp. NTG2 gene for 16S ribosomal RNA, partial sequence	AB920573	1252	ENA	1571709 tax ID	*
[Ref.: #20218]	Streptomyces sp. NTG5 gene for 16S ribosomal RNA, partial sequence	AB920576	1286	ENA	1571712 tax ID	*
[Ref.: #20218]	Streptomyces sp. NTGn11 gene for 16S ribosomal RNA, partial sequence	AB920578	1303	ENA	1571714 tax ID	*
[Ref.: #20218]	Streptomyces sp. NTHn1 gene for 16S ribosomal RNA, partial sequence	AB920579	1306	ENA	1571715 tax ID	*
[Ref.: #20218]	Streptomyces sp. NTHn2 gene for 16S ribosomal RNA, partial sequence	AB920580	1312	ENA	1571716 tax ID	*
[Ref.: #20218]	Streptomyces sp. NTM2 gene for 16S ribosomal RNA, partial sequence	AB920583	1297	ENA	1571719 tax ID	*
[Ref.: #20218]	Streptomyces sp. MTMn4 gene for 16S ribosomal RNA, partial sequence	AB920585	1279	ENA	1571721 tax ID	*
[Ref.: #20218]	Streptomyces sp. NTRH1 gene for 16S ribosomal RNA, partial sequence	AB920586	1287	ENA	1571722 tax ID	*
[Ref.: #20218]	Streptomyces violaceochromogenes strain IFO 13100 16S ribosomal RNA gene, partial sequence	AY999867	1425	ENA	67377 tax ID	*
[Ref.: #20218]	Streptomyces violaceochromogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 4530	D44215	121	ENA	67377 tax ID	*
[Ref.: #20218]	Streptomyces violaceochromogenes gene for 16S rRNA, partial sequence, strain: NBRC 13100	AB184312	1477	ENA	67377 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces violaceochromogenes JCM 4530	GCA_014650235	scaffold	GenBank	67377 tax ID	*
[Ref.: #66792]	Streptomyces violaceochromogenes strain JCM 4530	67377.3	wgs	PATRIC	67377 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces violaceochromogenes JCM 4530 NCBI: GCA_014650235.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces violaceochromogenes JCM 4530 NCBI: GCA_014650235.1
[Ref.: #69480]	flagellated	no	98.081	no
[Ref.: #69480]	gram-positive	yes	89.643	no
[Ref.: #69480]	anaerobic	no	99.049	no
[Ref.: #69480]	aerobic	yes	92.163	no
[Ref.: #69480]	halophile	no	93.571	no
[Ref.: #69480]	spore-forming	yes	95.045	yes
[Ref.: #69480]	glucose-util	yes	90.208	yes
[Ref.: #69480]	thermophile	no	98.18	yes
[Ref.: #69480]	motile	no	93.741	no
[Ref.: #69480]	glucose-ferment	no	90.544	no

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