Name: Streptomyces torulosus DSM 40894
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16056

Type strain:

Species: Streptomyces torulosus

Culture col. no.: DSM 40894, ATCC 29340, CBS 801.71, DSM 41249, IMRU 3950, JCM 4872, NRRL B-3889, CGMCC 4.1787, IFM 1283, IFO 15460, LMG 20305, MTCC 1826, NBRC 15460

Strain history: KCC S-0872 <-- NRRL B-3889 <-- A. J. Lyons and T. G. Pridham S-124 (F-57).

NCBI tax ID(s): 68276 (species)

SI-ID 44822

ATCC 29340, DSM 40894, DSM 41249, JCM 4872, NRRL B-3889, IFO 15460, CBS 801.71, NBRC 15460, LMG 20305, NRRL S-124, CGMCC 4.1787

Special Collections

Section

Streptomyces torulosus DSM 40894 is a spore-forming bacterium that builds an aerial mycelium and was isolated from soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces torulosus**
	Full Scientific Name (LPSN)	Streptomyces torulosus Lyons and Pridham 1971 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #18680]	Colony color	Yellow
[Ref.: #18680]	Incubation period	10-14 days
[Ref.: #18680]	Cultivation medium used	ISP 2

[Ref.: #18680]	Colony color	Yellow
[Ref.: #18680]	Incubation period	10-14 days
[Ref.: #18680]	Cultivation medium used	ISP 3

[Ref.: #18680]	Colony color	Yellow
[Ref.: #18680]	Incubation period	10-14 days
[Ref.: #18680]	Cultivation medium used	ISP 4

[Ref.: #18680]	Colony color	Yellow
[Ref.: #18680]	Incubation period	10-14 days
[Ref.: #18680]	Cultivation medium used	ISP 5

[Ref.: #18680]	Colony color	Brown
[Ref.: #18680]	Incubation period	10-14 days
[Ref.: #18680]	Cultivation medium used	ISP 6

[Ref.: #18680]	Colony color	Brown
[Ref.: #18680]	Incubation period	10-14 days
[Ref.: #18680]	Cultivation medium used	ISP 7

[Ref.: #18680]	Multicellular complex forming ability	yes
[Ref.: #18680]	Multicellular complex name	Aerial Mycelium
[Ref.: #18680]	Multicellular complex color	White
[Ref.: #18680]	Medium Name (multicellularity)	ISP 2

[Ref.: #18680]	Multicellular complex forming ability	yes
[Ref.: #18680]	Multicellular complex name	Aerial Mycelium
[Ref.: #18680]	Multicellular complex color	Grey
[Ref.: #18680]	Medium Name (multicellularity)	ISP 3

[Ref.: #18680]	Multicellular complex forming ability	yes
[Ref.: #18680]	Multicellular complex name	Aerial Mycelium
[Ref.: #18680]	Multicellular complex color	Grey
[Ref.: #18680]	Medium Name (multicellularity)	ISP 4

[Ref.: #18680]	Multicellular complex forming ability	yes
[Ref.: #18680]	Multicellular complex name	Aerial Mycelium
[Ref.: #18680]	Multicellular complex color	Grey
[Ref.: #18680]	Medium Name (multicellularity)	ISP 5

[Ref.: #18680]	Multicellular complex forming ability	no
[Ref.: #18680]	Medium Name (multicellularity)	ISP 6

[Ref.: #18680]	Multicellular complex forming ability	yes
[Ref.: #18680]	Multicellular complex name	Aerial Mycelium
[Ref.: #18680]	Multicellular complex color	Grey
[Ref.: #18680]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium

ISP 3

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Culture medium growth

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Culture medium

ISP 4

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Culture medium growth

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Culture medium

ISP 5

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Culture medium growth

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Culture medium

ISP 6

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Culture medium growth

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Culture medium

ISP 7

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9751]	growth	28 °C
[Ref.: #18680]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #18680]	Spore description	Formation of spore chains (spirales)(Sp), spore surface knobby
[Ref.: #18680]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %91.22
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18680]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18680]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18680]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #18680]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18680]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #18680]	mannitol ChEBI	+
[Ref.: #18680]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18680]	raffinose ChEBI	+
[Ref.: #18680]	rhamnose ChEBI	-
[Ref.: #18680]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18680]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18680]	188	-	-	-	-	-	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9751]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	IA
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

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Global distribution of 16S sequence AJ781367 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	18
Soil Samples	303
Animal Samples	44
Plant Samples	47
Total Samples	412

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18680]	Biosafety level	1	German classification
[Ref.: #9751]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces torulosus strain CGMCC 4.1787 16S ribosomal RNA gene, partial sequence	JN566028	1381	GenBank ENA	68276 tax ID	*
[Ref.: #20218]	Streptomyces torulosus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4872	D44416	121	GenBank ENA	68276 tax ID	*
[Ref.: #20218]	Streptomyces torulosus 16S rRNA gene, type strain LMG 20305	AJ781367	1479	GenBank ENA	68276 tax ID	*
[Ref.: #20218]	Streptomyces torulosus gene for 16S rRNA, partial sequence, strain: NBRC 15460	AB184686	1468	GenBank ENA	68276 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces torulosus NRRL B-3889	GCA_001419765	scaffold	GenBank ENA	68276 tax ID

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces torulosus NRRL B-3889 NCBI: GCA_001419765.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces torulosus NRRL B-3889 NCBI: GCA_001419765.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.468	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.77	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.178	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	91.22	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	80.5	no

Availability in culture collections External links

[Ref.: #9751]

Culture collection no.

DSM 40894, ATCC 29340, CBS 801.71, DSM 41249, IMRU 3950, JCM 4872, NRRL B-3889, CGMCC 4.1787, IFM 1283, IFO 15460, LMG 20305, MTCC 1826, NBRC 15460

[Ref.: #85129]

SI-ID 44822

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces himalayensis sp. nov. including Streptomyces himalayensis subsp. himalayensis subsp. nov. and Streptomyces himalayensis subsp. aureolus subsp. nov. isolated from Western Himalaya.	Maiti PK, Mandal S	Arch Microbiol	10.1007/s00203-021-02232-7	2021	*
Phylogeny	Streptomyces capitiformicae sp. nov., a novel actinomycete producing angucyclinone antibiotics isolated from the head of Camponotus japonicus Mayr.	Jiang S, Piao C, Yu Y, Cao P, Li C, Yang F, Li M, Xiang W, Liu C	Int J Syst Evol Microbiol	10.1099/ijsem.0.002468	2017	*
Phylogeny	Streptomyces vulcanius sp. nov., a novel actinomycete isolated from volcanic sediment.	Jia F, Liu C, Zhao J, Zhang Y, Li L, Zhou S, Shen Y, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-014-0299-9	2014	*

References

#9751

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40894

#18680

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85129

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44822.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces torulosus NRRL B-3889

Streptomyces torulosus NRRL B-3889

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