Name: Streptomyces thermoviolaceus R-77
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16049

Type strain:

Species: Streptomyces thermoviolaceus

Strain Designation: R-77

Culture col. no.: DSM 40443, ATCC 19283, CBS 278.66, CBS 688.72, IFO 13387, ISP 5443, NBRC 13387, RIA 1348, JCM 4337, BCRC 12493, BCRC 12639, CGMCC 4.1471, HAMBI 1006, HUT 6604, IFO 13905, IMET 43353, JCM 4843, LMG 14943, LMG 19359, NBRC 13905, NCIMB 10076, NRRL B-12374, VKM Ac-1857, VTT E-991428

Strain history: KCC S-0337 <-- A. Henssen R₇₇.

NCBI tax ID(s): 1952 (species)

SI-ID 13993

LMG 14943, ATCC 19283, CCRC 12493, CCRC 12639, DSM 40443, IFO 12382, IFO 13387, IFO 13905, IMET 43353, JCM 4337, JCM 4843, LMG 19359, NCIMB 10076, NRRL B-12374, JCM 4239, HUT 6604, VKM Ac-1857, CBS 278.66, AS 4.1471, CBS688.66, NBRC 12382, NBRC 13387, NBRC 13905, BCRC 12493, BCRC 12639, HAMBI 1006, KCTC 19948, NCIB 10076, CGMCC 4.1471, VTT E-991428

Other strains from Streptomyces thermoviolaceus

S. thermoviolaceus ST028235(HKI), FSU-3771, GT20046057,
S. thermoviolaceus SF001148(FSU),
S. thermoviolaceus CCUG 27706

Section

Streptomyces thermoviolaceus R-77 is a spore-forming, thermophilic bacterium that was isolated from mixed fresh horse and swine manure.

spore-forming
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces thermoviolaceus**
	Full Scientific Name (LPSN)	Streptomyces thermoviolaceus Henssen 1957 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.533

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9547]	growth	45 °C
[Ref.: #18591]	optimum	28 °C
[Ref.: #67770]	growth	50 °C

[Ref.: #9547]	Temperature range	thermophilic
[Ref.: #18591]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18591]		NaCl		maximum	7.5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18591]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18591]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18591]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18591]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #18591]	mannitol ChEBI	-
[Ref.: #18591]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18591]	raffinose ChEBI	-
[Ref.: #18591]	rhamnose ChEBI	-
[Ref.: #18591]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18591]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18591]	148	-	-	-	-	+	-	+	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9547]	Sample type/isolated from	mixed fresh horse and swine manure

[Ref.: #67770]	Sample type/isolated from	Fresh horse-swine mixed manure
[Ref.: #67770]	Geographic location (country and/or sea, region)	Berlin
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Equidae (Horse)
#Host	#Mammals	#Suidae (Pig,Swine)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18591]	Biosafety level	1	German classification
[Ref.: #9547]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	S.thermoviolaceus 16S rRNA gene	Z68096	1483	ENA	1952 tax ID	*
[Ref.: #20218]	Streptomyces thermoviolaceus subsp. thermoviolaceus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4337	D44059	121	ENA	66860 tax ID	*
[Ref.: #20218]	Streptomyces thermoviolaceus subsp. thermoviolaceus gene for 16S rRNA, partial sequence, strain: NBRC 13387	AB184371	1454	ENA	66860 tax ID	*
[Ref.: #20218]	Streptomyces thermoviolaceus subsp. thermoviolaceus gene for 16S rRNA, partial sequence, strain: NBRC 13905	AB184545	1479	ENA	66860 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces thermoviolaceus subsp. thermoviolaceus JCM 4843	GCA_014650975	scaffold	GenBank	66860 tax ID	*
[Ref.: #66792]	Streptomyces thermoviolaceus subsp. thermoviolaceus NBRC 13905	GCA_012034235	contig	GenBank	66860 tax ID	*
[Ref.: #66792]	Streptomyces thermoviolaceus subsp. thermoviolaceus strain JCM 4843	66860.4	wgs	PATRIC	66860 tax ID	*
[Ref.: #66792]	Streptomyces thermoviolaceus subsp. thermoviolaceus strain NBRC 13905	66860.3	wgs	PATRIC	66860 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces thermoviolaceus subsp. thermoviolaceus JCM 4843 NCBI: GCA_014650975.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces thermoviolaceus subsp. thermoviolaceus JCM 4843 NCBI: GCA_014650975.1
[Ref.: #69480]	flagellated	no	98.084	no
[Ref.: #69480]	gram-positive	yes	91.989	no
[Ref.: #69480]	anaerobic	no	99.034	no
[Ref.: #69480]	aerobic	yes	90.507	no
[Ref.: #69480]	halophile	no	89.336	no
[Ref.: #69480]	spore-forming	yes	94.945	no
[Ref.: #69480]	thermophile	yes	60.274	no
[Ref.: #69480]	glucose-util	yes	88.133	no
[Ref.: #69480]	motile	no	93.328	no
[Ref.: #69480]	glucose-ferment	no	89.581	no

Availability in culture collections External links

[Ref.: #9547]

Culture collection no.

DSM 40443, ATCC 19283, CBS 278.66, CBS 688.72, IFO 13387, ISP 5443, NBRC 13387, RIA 1348, JCM 4337, BCRC 12493, BCRC 12639, CGMCC 4.1471, HAMBI 1006, HUT 6604, IFO 13905, IMET 43353, JCM 4843, LMG 14943, LMG 19359, NBRC 13905, NCIMB 10076, NRRL B-12374, VKM Ac-1857, VTT E-991428

[Ref.: #85122]

SI-ID 13993

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of four subspecies in the genus Streptomyces to Streptomyces rubradiris sp. nov., Streptomyces asoensis sp. nov., Streptomyces fructofermentans sp. nov. and Streptomyces ossamyceticus sp. nov.	Komaki H, Tamura T	Int J Syst Evol Microbiol	10.1099/ijsem.0.005078	2021	*
	Carbohydrate-containing polymers of the cell wall of the thermophilic streptomycete Streptomyces thermoviolaceus subsp. thermoviolaceus VKM Ac-1857T.	Kozlova YI, Streshinskaya GM, Shashkov AS, Senchenkova SN, Evtushenko LI	Biochemistry (Mosc)	10.1134/s0006297906070108	2006	*

References

#9547

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40443

#18591

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85122

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13993.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces thermoviolaceus subsp. thermoviolaceus JCM 4843

Streptomyces thermoviolaceus subsp. thermoviolaceus JCM 4843

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