Streptomyces heilongjiangensis (DSM 42073, CGMCC 4.7004, NEAU-W2)

Name: Streptomyces heilongjiangensis (DSM 42073, CGMCC 4.7004, NEAU-W2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16024

Type strain

Strain Designation NEAU-W2

Culture col. no. DSM 42073 CGMCC 4.7004 NEAU-W2 JCM 19675 ATCC BAA-2424

NCBI tax ID(s) 945052

Special Collections DSMZ JCM Wink compendium Literature strains

History <- C. Liu,School of Life Science, Northeast Agricultural University, China; NEAU-W2 CGMCC 4.7004 <-- C. Liu et al.; Northeast Agric. Univ., China; NEAU-W2.

Links

Streptomyces heilongjiangensis NEAU-W2 is an aerobe, spore-forming, mesophilic prokaryote that builds an aerial mycelium and was isolated from root surface of soybean glycine max Merr.

spore-forming Gram-positive rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 389433

ATCC BAA-2424,CGMCC 4.7004,DSM 42073

@ref 20215

Last LPSN update 2026-02-09 11:21:52

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces heilongjiangensis

Full scientific name Streptomyces heilongjiangensis Liu et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30665	positive	0.9 µm	0.7 µm	rod-shaped
125439	positive				99.7
125439					91.4

Colony morphology

@ref	Colony color	Medium used
69339	Green brown (8000)	ISP 6
69339	Colourless	ISP 2
69339	Brown grey (7013), sepia brown (8014)	suter with tyrosine
69339	Beige (1001)	ISP 5
69339	Ivory (1014)	suter without tyrosine
69339	Sand yellow (1002)	ISP 3
69339	Stone grey ( 7030)	ISP 7
69339	Yellow grey (7034)	ISP 4

Multicellular morphology

@ref	Complex name	Complex color	Medium name
69339	Aerial mycelium		ISP 2
69339	Aerial mycelium	Grey white (9002), signal white (9003)	ISP 3
69339	Aerial mycelium	Traffic white (9016)	ISP 4
69339	Aerial mycelium	Traffic white (9016)	ISP 5
69339	Aerial mycelium		ISP 6
69339	Aerial mycelium	Signal white (9003)	ISP 7
69339	Aerial mycelium		suter with tyrosine
69339	Aerial mycelium		suter without tyrosine

Pigmentation

@ref	Color	Name
30665
69339		melanin pigment
69339	Sand yellow (1002), green brown (8000), stone grey (7030), olive grey (7002)	soluble pigment

Multimedia

@ref:	18154
multimedia content:	DSM_42073.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_42073.jpg
caption:	Medium 84 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	69339
multimedia content:	DSM_42073_image3.jpeg
multimedia.multimedia content:	DSM_42073_image3.jpeg
caption:	Plates (252, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	69339
multimedia content:	DSM_42073_image4.jpeg
multimedia.multimedia content:	DSM_42073_image4.jpeg
caption:	Plates (252, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
18154	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
18154	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
18154	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
18154	positive	growth	28	mesophilic
30665	positive	growth	15-40
30665	positive	optimum	30	mesophilic
67770	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
30665	positive	optimum	7
30665	positive	growth	05-11	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30665	aerobe
125438	aerobe	90.425
125439	obligate aerobe	98.8

Spore formation

@ref	Spore formation	Confidence
30665
125439		93
125438		92.962

Compound production

18154

Compoundborrelidin

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30665	NaCl	positive	growth	0-5 %
69339	NaCl	positive	growth	0-2.5 %

Observation

@ref	Observation
30665	aggregates in chains
67770	quinones: MK-9(H₆), MK-9(H₈)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69339	22599 ChEBI	arabinose	+	growth
30665	22599 ChEBI	arabinose	+	carbon source
69339	62968 ChEBI	cellulose	-	growth
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
30665	4853 ChEBI	esculin	+	hydrolysis
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
30665	28757 ChEBI	fructose	+	carbon source
69339	28757 ChEBI	fructose	+	growth
30665	28260 ChEBI	galactose	+	carbon source
68379	5291 ChEBI	gelatin	+	hydrolysis	from API Coryne
30665	17234 ChEBI	glucose	+	carbon source
69339	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
69339	17268 ChEBI	inositol	+	growth
30665	17716 ChEBI	lactose	+	carbon source
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
30665	17306 ChEBI	maltose	+	carbon source
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
30665	29864 ChEBI	mannitol	+	carbon source
30665	37684 ChEBI	mannose	+	carbon source
69339	37684 ChEBI	mannose	+	growth
30665	17632 ChEBI	nitrate	+	reduction
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
30665	16634 ChEBI	raffinose	+	carbon source
69339	16634 ChEBI	raffinose	+	growth
30665	26546 ChEBI	rhamnose	+	carbon source
69339	26546 ChEBI	rhamnose	+	growth
30665	33942 ChEBI	ribose	+	carbon source
30665	30911 ChEBI	sorbitol	+	carbon source
30665	17992 ChEBI	sucrose	+	carbon source
69339	17992 ChEBI	sucrose	+	growth
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
30665	18222 ChEBI	xylose	+	carbon source
69339	18222 ChEBI	xylose	+	growth

Metabolite production

@ref	Chebi-ID	Metabolite	Production
30665	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	beta-galactosidase	+	3.2.1.23	from API zym
68379	beta-galactosidase	+	3.2.1.23	from API Coryne
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68382	cystine arylamidase	-	3.4.11.3	from API zym
68379	gelatinase	+		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68379	urease	-	3.5.1.5	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69339	-	-	-	+	-	+	-	-	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69339	not determinedn.d.	+	+/-	+/-	-	+	+/-	-	+/-	+	+	+	+/-	+	-	+/-	+	+/-	+/-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
18154	root surface of soybean glycine max (L.) Merr	Glycine max	Hulin, Heilongjiang province (46° 16' N 133° 36' E)	China	CHN	Asia	46.2667	133.6 46.2667/133.6
67770	Root surface of soybean from Hulin		Heilongjiang Province, northern China	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18154	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM4265702v1 assembly for Streptomyces heilongjiangensis CGMCC 4.7004	scaffold	GCA_042657025			945052	48.84
66792	ASM2840140v1 assembly for Streptomyces heilongjiangensis NEAU-W2	contig	GCA_028401405	945052.3	8048406513	945052	27.6

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18154	Streptomyces heilongjiangensis strain NEAU-W2 16S ribosomal RNA gene, partial sequence	JF431459	1520		945052

GC content

@ref	GC-content (mol%)	Method
18154	66.12	thermal denaturation, midpoint method (Tm)
30665	66.12

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces heilongjiangensis NEAU-W2
NCBI: GCA_028401405

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	93.00	no
125439	motility	BacteriaNetⓘ	no	91.40	no
125439	gram_stain	BacteriaNetⓘ	positive	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces heilongjiangensis NEAU-W2
NCBI: GCA_028401405.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.77	yes
125438	anaerobic	anaerobicⓘ	no	90.49	no
125438	aerobic	aerobicⓘ	yes	90.43	yes
125438	spore-forming	spore-formingⓘ	yes	92.96	yes
125438	thermophilic	thermophileⓘ	no	94.00	no
125438	flagellated	motile2+ⓘ	no	89.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Discovery of Three 22-Membered Macrolides by Deciphering the Streamlined Genome of Mangrove-Derived Streptomyces sp. HM190.	Ye Y, Anwar N, Mao X, Wu S, Yan C, Zhao Z, Zhang R, Nie Y, Zhang J, Wang J, Wu M	Front Microbiol	10.3389/fmicb.2020.01464	2020
Phylogeny	Streptomyces heilongjiangensis sp. nov., a novel actinomycete that produces borrelidin isolated from the root surface of soybean [Glycine max (L.) Merr].	Liu C, Wang X, Yan Y, Wang J, Zhang B, Zhang J, Xiang W	Int J Syst Evol Microbiol	10.1099/ijs.0.041483-0	2012

References

#18154	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42073
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26996	IJSEM 1030 2013 ( DOI 10.1099/ijs.0.041483-0 , PubMed 22707527 )
#30665	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26996
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69339	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces heilongjiangensis (DSM 42073, CGMCC 4.7004, NEAU-W2)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042657025

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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