Gordonia rubripertincta (DSM 46758, CWB2)

Name: Gordonia rubripertincta (DSM 46758, CWB2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160171

Type strain

Strain Designation CWB2

Culture col. no. DSM 46758 CWB2

NCBI tax ID(s) 36822

Special Collections DSMZ

History <- D. Tischler, TU Bergakademie Freiberg,Germany;CW82

Links

Gordonia rubripertincta CWB2 is a mesophilic prokaryote that was isolated from soil.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 398463

DSM 46758

@ref 20215

Last LPSN update 2025-12-16 10:08:26

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Gordoniaceae

Genus Gordonia

Species Gordonia rubripertincta

Full scientific name Gordonia rubripertincta corrig. (Hefferan 1904) Stackebrandt et al. 1989

Synonyms (8)

Rhodococcus corallinus
Gordonia rubropertinctus
"Bacillus rubropertinctus"
"Gordona rubra"
"Serratia corallina"
Rhodococcus rubropertinctus
Gordona rubropertinctus
Gordona rubripertincta

BacDive ID	Other strains from **Gordonia rubripertincta** (11)	Type strain
10559	G. rubripertincta DSM 43197, ATCC 14352, JCM 3204, KCC A-0204, ... (type strain)
10561	G. rubripertincta DSM 43248, ATCC 25593, CIP 100848, IMET 7372, ...
10562	G. rubripertincta 279, Breed 279, Schering 259, DSM 43291, ...
10563	G. rubripertincta Schering 283, DSM 43303, ATCC 15905, RIA ...
10564	G. rubripertincta DSM 43570, CBS 606.67, SN 5800
10565	G. rubripertincta 60017, DSM 46038, ATCC 19067, IMET 7425, ...
10566	G. rubripertincta 60027, B-4-1443-54, Mitsuitoatsu Chem. I, ...
10567	G. rubripertincta Gdf N658, M658, T4, DSM 46066, CIP 104650, ...
103876	G. rubripertincta SF005681(FSU),
147230	G. rubripertincta CCUG 33112
148571	G. rubripertincta CCUG 35652

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	98.9
125439		91.9
125438		90
125438	positive	91.921

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67075	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
67075	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67075	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	92.7

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67075	soil	Germany	DEU	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
67075	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM356862v1 assembly for Gordonia rubripertincta CWB2	complete	GCA_003568625	36822.6	2843168903	36822	98.2

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Gordonia rubripertincta CWB2
IMG: 2843168903

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	56.40	no
125439	motility	BacteriaNetⓘ	no	91.90	no
125439	gram_stain	BacteriaNetⓘ	positive	98.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	92.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Gordonia rubripertincta CWB2
NCBI: GCA_003568625.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.92	no
125438	anaerobic	anaerobicⓘ	no	98.20	no
125438	aerobic	aerobicⓘ	yes	89.92	no
125438	spore-forming	spore-formingⓘ	no	60.58	no
125438	thermophilic	thermophileⓘ	no	97.47	yes
125438	flagellated	motile2+ⓘ	no	90.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Data on metal-chelating, -immobilisation and biosorption properties by Gordonia rubripertincta CWB2 in dependency on rare earth adaptation.	Schwabe R, Senges CHR, Bandow JE, Heine T, Lehmann H, Wiche O, Schlomann M, Levican G, Tischler D.	Data Brief	10.1016/j.dib.2020.105739	2020
Enzymology	Biochemical Characterization of Phenylacetaldehyde Dehydrogenases from Styrene-degrading Soil Bacteria.	Zimmerling J, Oelschlagel M, Grossmann C, Voitel M, Schlomann M, Tischler D.	Appl Biochem Biotechnol	10.1007/s12010-020-03421-8	2021
	Screening for Microbial Metal-Chelating Siderophores for the Removal of Metal Ions from Solutions.	Hofmann M, Heine T, Malik L, Hofmann S, Joffroy K, Senges CHR, Bandow JE, Tischler D.	Microorganisms	10.3390/microorganisms9010111	2021
Metabolism	Analysis of desferrioxamine-like siderophores and their capability to selectively bind metals and metalloids: development of a robust analytical RP-HPLC method.	Schwabe R, Anke MK, Szymanska K, Wiche O, Tischler D	Res Microbiol	10.1016/j.resmic.2018.08.002	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67075	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46758
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Gordonia rubripertincta (DSM 46758, CWB2)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003568625

Genome-based predictions

Predictions

Literature

Literature

References

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