Strain identifier
BacDive ID: 160171
Type strain: 
Species: Gordonia rubripertincta
Strain Designation: CWB2
Strain history: <- D. Tischler, TU Bergakademie Freiberg,Germany;CW82
NCBI tax ID(s): 36822 (species)
version 9.3 (current version)
General
@ref: 67075
BacDive-ID: 160171
DSM-Number: 46758
keywords: genome sequence, Bacteria, mesophilic
description: Gordonia rubripertincta CWB2 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 36822
- Matching level: species
strain history
- @ref: 67075
- history: <- D. Tischler, TU Bergakademie Freiberg,Germany;CW82
doi: 10.13145/bacdive160171.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Gordoniaceae
- genus: Gordonia
- species: Gordonia rubripertincta
- full scientific name: Gordonia rubripertincta corrig. (Hefferan 1904) Stackebrandt et al. 1989
synonyms
@ref synonym 20215 Gordonia rubropertinctus 20215 Gordona rubripertincta 20215 Gordona rubra 20215 Rhodococcus rubropertinctus 20215 Gordona rubropertinctus 20215 Rhodococcus corallinus 20215 Bacillus rubropertinctus 20215 Serratia corallina
@ref: 67075
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Gordoniaceae
genus: Gordonia
species: Gordonia rubripertincta
full scientific name: Gordonia rubripertincta (Hefferan 1904) Stackebrandt et al. 1989 emend. Nouioui et al. 2018
strain designation: CWB2
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125439 | positive | 98.9 | |
| 125439 | 91.9 | no | |
| 125438 | 90 | no | |
| 125438 | positive | 91.921 |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 67075 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf | |
| 67075 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
- @ref: 67075
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 92.7
Isolation, sampling and environmental information
isolation
- @ref: 67075
- sample type: soil
- country: Germany
- origin.country: DEU
- continent: Europe
Safety information
risk assessment
- @ref: 67075
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Gordonia rubripertincta CWB2 | GCA_003568625 | complete | ncbi | 36822 |
| 66792 | Gordonia rubripertincta CWB2 | 2843168903 | complete | img | 36822 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 91.921 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 98.197 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 89.924 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 60.584 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 97.466 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 90 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 56.4 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 91.9 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 98.9 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 92.7 |
External links
@ref: 67075
culture collection no.: DSM 46758
straininfo link
- @ref: 112444
- straininfo: 398463
literature
- topic: Metabolism
- Pubmed-ID: 30138722
- title: Analysis of desferrioxamine-like siderophores and their capability to selectively bind metals and metalloids: development of a robust analytical RP-HPLC method.
- authors: Schwabe R, Anke MK, Szymanska K, Wiche O, Tischler D
- journal: Res Microbiol
- DOI: 10.1016/j.resmic.2018.08.002
- year: 2018
- mesh: Chromatography, High Pressure Liquid/methods, Chromatography, Reverse-Phase/*methods, Deferoxamine/*analysis/metabolism, Gordonia Bacterium/chemistry/*metabolism, Metalloids/*analysis/metabolism, Metals/*analysis/metabolism, Siderophores/*analysis/metabolism
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67075 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46758 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46758) | |
| 112444 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398463.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |