Name: Gordonia rubripertincta Gdf N658
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 10567

Type strain:

Species: Gordonia rubripertincta

Strain Designation: Gdf N658, M658, T4

Culture col. no.: DSM 46066, CIP 104650, IMET 7481, Tsukamura 3606

Strain history: CIP <- 1995, DSM <- IMET <- M. Goodfellow: strain M658, Rhodococcus corallinus

NCBI tax ID(s): 36822 (species)

SI-ID 50720

CIP 104650, DSM 46066, IMET 7481

Other strains from Gordonia rubripertincta

Section

Gordonia rubripertincta Gdf N658 is an obligate aerobe, mesophilic, Gram-positive bacterium of the family Gordoniaceae.

Gram-positive
rod-shaped
mesophilic
obligate aerobe
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Gordoniaceae*
	Genus	*Gordonia*
	Species	**Gordonia rubripertincta**
	Full Scientific Name (LPSN)	Gordonia rubripertincta corrig. (Hefferan 1904) Stackebrandt et al. 1989

	Synonym	"Bacillus* rubropertinctus"*
	Synonym	Rhodococcus corallinus
	Synonym	"Serratia* corallina"*
	Synonym	Rhodococcus rubropertinctus
	Synonym	Gordona rubropertinctus
	Synonym	Gordonia rubropertinctus
	Synonym	Gordona rubripertincta
	Synonym	"Gordona* rubra"*

Information on morphological and physiological properties Morphology

[Ref.: #122296]	Gram stain	positive

[Ref.: #122296]	Cell shape	rod-shaped

[Ref.: #122296]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12416]

Culture medium

GYM+S MEDIUM (DSMZ Medium 214)

[Ref.: #12416]

Culture medium growth

[Ref.: #12416]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12416]

Culture medium composition

expand / minimize

[Ref.: #12416]

Culture medium

ORGANIC MEDIUM 79 (DSMZ Medium 426)

[Ref.: #12416]

Culture medium growth

[Ref.: #12416]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12416]

Culture medium composition

expand / minimize

[Ref.: #41383]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #41383]

Culture medium growth

[Ref.: #41383]

Culture medium composition

expand / minimize

[Ref.: #122296]

Culture medium

CIP Medium 3

[Ref.: #122296]

Culture medium growth

[Ref.: #122296]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #12416]		growth	28 °C
[Ref.: #41383]		growth	30 °C
[Ref.: #122296]		growth	10-41 °C
[Ref.: #122296]	no	growth	45 °C

[Ref.: #12416]	Temperature range	mesophilic
[Ref.: #41383]	Temperature range	mesophilic
[Ref.: #122296]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #122296]

Oxygen tolerance

obligate aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #122296]	NaCl		growth	0-6	%
[Ref.: #122296]	NaCl	no	growth	8	%
[Ref.: #122296]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #122296]	citrate ChEBI	-	carbon source
[Ref.: #122296]	esculin ChEBI	-	hydrolysis
[Ref.: #122296]	nitrate ChEBI	-	reduction
[Ref.: #122296]	nitrate ChEBI	-	respiration
[Ref.: #122296]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #122296]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #122296]		acetoin ChEBI	-
[Ref.: #122296]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122296]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122296]	amylase	-
[Ref.: #122296]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122296]	caseinase	-	3.4.21.50
[Ref.: #122296]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #122296]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122296]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #122296]	gelatinase	-
[Ref.: #122296]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122296]	lipase	-
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #122296]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122296]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122296]	oxidase	-
[Ref.: #122296]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122296]	tryptophan deaminase	-
[Ref.: #122296]	tween esterase	-
[Ref.: #122296]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122296]	748	not determinedn.d.	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	+	-	-	+	-	-	-	+	-	-	-	-	-	-	-	+	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122296]	8098	-	+	+	+	+	+	+	+	-	-	+	+	-	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #122296]	Isolation date	1979
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12416]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122296]	Biosafety level	1	Risk group (French classification)

Availability in culture collections External links

[Ref.: #12416]

Culture collection no.

DSM 46066, CIP 104650, IMET 7481, Tsukamura 3606

[Ref.: #79842]

SI-ID 50720

References

#12416

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46066

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#41383 ; Curators of the CIP;

#68382

Automatically annotated from API zym .

#79842

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID50720.1 )

#122296 Collection of Institut Pasteur ; Curators of the CIP; CIP 104650
* These data were automatically processed and therefore are not curated

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